PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00454g04003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 236aa    MW: 26451.8 Da    PI: 7.6221
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00454g04003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19104154255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ t eeAa a+++a+ +++g
  Niben101Scf00454g04003.1 104 HYRGVRRRP-WGKFAAEIRDPAKNG--ARVWLGTYETDEEAAIAYDKAAYRMRG 154
                               7********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.7E-32103163IPR001471AP2/ERF domain
SMARTSM003803.0E-35104168IPR001471AP2/ERF domain
CDDcd000186.81E-29104163No hitNo description
PROSITE profilePS5103224.131104162IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23104164IPR016177DNA-binding domain
PfamPF008474.3E-14104154IPR001471AP2/ERF domain
PRINTSPR003674.2E-13105116IPR001471AP2/ERF domain
PRINTSPR003674.2E-13144164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MNHSIYTELL PANFPGDFPV YRRNSSFSRL IPCLTETWGE LPLKVDDSED MVIYTLLKDA  60
LNVGWSPFNF TAGEVKSEPR EEEIVVSPAE TTAAPATESP RGRHYRGVRR RPWGKFAAEI  120
RDPAKNGARV WLGTYETDEE AAIAYDKAAY RMRGSKAHLN FPHRIGLNEP EPVRVTAKRR  180
ASPEPASSLE NSSPKRRRKA VAAEKSEAVE VESESNVLQV GCQVELFTRG HQLIVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-33101169270ATERF1
3gcc_A2e-33101169270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177198KRRASPEPASSLENSSPKRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate. {ECO:0000250, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Highly and transiently expressed in tobacco mosaic virus (TMV) infected leaves. Induced by methyl-jasmonate (MeJA), and by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Quickly and transiently induced by salicylic acid (SA). Strongly induced by wounding, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by MeJA. Also induced by acetyl salicylic acid (ASA), cycloheximide, auxin (2,4-D), and benzoic acid (BA) but seems to not be influenced by 4-hydroxybenzoic acid (4HBA), thiamine, H(2)O(2) or abscisic acid (ABA). {ECO:0000269|PubMed:7756828, ECO:0000269|PubMed:9725022, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019251678.11e-162PREDICTED: ethylene-responsive transcription factor 1
SwissprotQ404761e-153ERF1_TOBAC; Ethylene-responsive transcription factor 1
TrEMBLA0A060N2E71e-163A0A060N2E7_9SOLA; Ethylene response factor (Fragment)
STRINGXP_009771895.11e-153(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40542245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-47ethylene responsive element binding factor 1