PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00425g03034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 302aa MW: 34687.6 Da PI: 4.5837 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.7e-19 | 86 | 139 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe+ +++ e++ +LAk+lgL+ rq+ +WFqNrRa+++ Niben101Scf00425g03034.1 86 KKRRLTANQVQFLEKSFEEVNKLEPERKDQLAKELGLQPRQIAIWFQNRRARWR 139 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 125.1 | 3.3e-40 | 85 | 177 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 ekkrrl+++qv++LE+sFee +kLeperK +la+eLglqprq+a+WFqnrRAR++tkqlE++yeaL+++yd+lk++ +L ke++ Niben101Scf00425g03034.1 85 EKKRRLTANQVQFLEKSFEEVNKLEPERKDQLAKELGLQPRQIAIWFQNRRARWRTKQLENNYEALRNKYDNLKADYINLLKEKD 169 69*********************************************************************************** PP HD-ZIP_I/II 86 eLreelke 93 +Lr+++++ Niben101Scf00425g03034.1 170 DLRAQVSQ 177 ***99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.702 | 81 | 141 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-19 | 84 | 145 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.59E-18 | 84 | 152 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.2E-16 | 86 | 139 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.57E-17 | 86 | 142 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-20 | 87 | 148 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.0E-6 | 112 | 121 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 116 | 139 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.0E-6 | 121 | 137 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.3E-11 | 141 | 182 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MAGPELFYGD AAGFNGILLQ NQRLMSSFAT KEAVASPRYS PSFLASGSMV SFRVVNGGNK 60 SDRSLFQSVE ENETDELEEY LNQPEKKRRL TANQVQFLEK SFEEVNKLEP ERKDQLAKEL 120 GLQPRQIAIW FQNRRARWRT KQLENNYEAL RNKYDNLKAD YINLLKEKDD LRAQVSQFTD 180 MLLHKEKEKG ELATSDIKEL SDASPKENMI DQKVSAITLK QHKDLNSLQS DMFDSERLVQ 240 PSILDQGDSS YAFEPDQSDL SQDEEENLSK NLVVQDHYPM TSSNLSCFGY SVEDQGFGFW 300 SF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019227837.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1 | ||||
TrEMBL | A0A314KNV7 | 0.0 | A0A314KNV7_NICAT; Homeobox-leucine zipper protein hat5 | ||||
STRING | XP_009604802.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-41 | homeobox 1 |