PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00419g00023.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 434aa MW: 47601.2 Da PI: 4.7383

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00419g00023.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.5	7.3e-11	382	427	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L A +YIk+L+ Niben101Scf00419g00023.1 382 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDFAADYIKELE 427 689*******************7....688*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.5	376	426	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-14	379	432	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.54E-11	380	431	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.8E-13	381	433	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.8E-8	382	427	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-12	382	432	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MDHRSHQQQQ MTSGLTRYRS APSSYFSSLL SSNNPAAVAS GSGNCGYGRD DFDQLLNSRA 60 STTDIKQVFD RFVANIDPQD MNSNGLIGDT QQNQMSNMNV RSEVVAPTKL EHEQSQAQQS 120 QNSQFIAPVK QETQQNDDYS LASQMNYQTQ AQQNDNLELT SAMNNFARFL GAADSNCLNQ 180 TKMDGGFGTG CSNSNLTRYN SSPAGFFAQF DIENEYGAMR GIGGYGAGGN AAAEASFPTP 240 NRFSSQTPLQ SGQLPSSGLL APISEFGAKS IEEGRVGDES FGKGHKNDES YMTGFSMPSW 300 DDSQMLTDDF LQVPEDNEAE PFSNVNASDS QNSEGRARPP TLLSHLSLPQ TSAELSAMEK 360 LLQDSVPCKV RAKRGCATHP RSIAERVRRT RISERMRKLQ ELVPNMDKQT NTADMLDFAA 420 DYIKELEAQV KKVQ

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MDHRSHQQQQ MTSGLTRYRS APSSYFSSLL SSNNPAAVAS GSGNCGYGRD DFDQLLNSRA  60
STTDIKQVFD RFVANIDPQD MNSNGLIGDT QQNQMSNMNV RSEVVAPTKL EHEQSQAQQS  120
QNSQFIAPVK QETQQNDDYS LASQMNYQTQ AQQNDNLELT SAMNNFARFL GAADSNCLNQ  180
TKMDGGFGTG CSNSNLTRYN SSPAGFFAQF DIENEYGAMR GIGGYGAGGN AAAEASFPTP  240
NRFSSQTPLQ SGQLPSSGLL APISEFGAKS IEEGRVGDES FGKGHKNDES YMTGFSMPSW  300
DDSQMLTDDF LQVPEDNEAE PFSNVNASDS QNSEGRARPP TLLSHLSLPQ TSAELSAMEK  360
LLQDSVPCKV RAKRGCATHP RSIAERVRRT RISERMRKLQ ELVPNMDKQT NTADMLDFAA  420
DYIKELEAQV KKVQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016483155.1	0.0	PREDICTED: transcription factor bHLH122-like
Refseq	XP_016483156.1	0.0	PREDICTED: transcription factor bHLH122-like
Refseq	XP_016483157.1	0.0	PREDICTED: transcription factor bHLH122-like
TrEMBL	A0A1S4B2V2	0.0	A0A1S4B2V2_TOBAC; transcription factor bHLH122-like
STRING	XP_009785469.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4605	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	6e-45	bHLH family protein