PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00414g02003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 276aa    MW: 31223.4 Da    PI: 10.1939
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00414g02003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035116135221
                               EETTTTEEESSHHHHHHHHH CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                               +C++Cgk F +k +L  H+r
  Niben101Scf00414g02003.1 116 TCSICGKKFLSKKSLFGHMR 135
                               7******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551505779IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.2E-95879No hitNo description
PfamPF139126.6E-45979IPR007087Zinc finger, C2H2
SuperFamilySSF576677.2E-9110137No hitNo description
Gene3DG3DSA:3.30.160.601.5E-4114137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.492115142IPR007087Zinc finger, C2H2
SMARTSM003550.0021115137IPR015880Zinc finger, C2H2-like
PfamPF139122.7E-5117139IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MADKQEHRLI LKGSGSGTGT LWVIKDHNDD DHDQHNFGFE DEDKAQIQRK NNSPSRNICH  60
VYKKGFSSGK ALGGHMRIHN NQHIPLSKKR KLQMKKQEVI DILRKKKMGR NRPPITCSIC  120
GKKFLSKKSL FGHMRCHPDR NWRGIHPPPT ELSKAVGGWS VTAKRGRRTN SSEEEEQLRE  180
EVHYLMLLAH GHSLEDTGKL ETTNTNCNTA DKEEEKHICR PIKRMKKFKD LGSIQDASID  240
STVISSSFTL LLGSTNNIGT TMDDHKPQLS SSGQIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
188106KRKLQMKKQEVIDILRKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019248442.11e-128PREDICTED: uncharacterized protein LOC109227700
TrEMBLA0A1J6IBC41e-127A0A1J6IBC4_NICAT; Uncharacterized protein
STRINGXP_009764490.11e-118(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.12e-18C2H2 family protein