PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00397g11005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 236aa MW: 26931.8 Da PI: 8.9455 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.9 | 2e-26 | 36 | 86 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKA+ELS+LCda++ +i+fs tgkl+eyss Niben101Scf00397g11005.1 36 KKIDNLTARQVTFSKRRRGLFKKAQELSTLCDADIGLIVFSATGKLFEYSS 86 68***********************************************96 PP | |||||||
2 | K-box | 32.4 | 4e-12 | 112 | 191 | 11 | 90 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 + + +s ++++ L e + re+R+l Ge+L+ L l+eL++Le+ +e +++++ + K+ l e+ ++l+++ ++++ + Niben101Scf00397g11005.1 112 SFNFQSAKKNYGMLSWEFAEKNRELRQLNGEELQGLGLEELMKLEKIVEGGISRVMKIKEAQLQEENSQLKQQSQQARLN 191 55667777777777777777789*************************************************99998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.777 | 28 | 88 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.7E-39 | 28 | 87 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 30 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.95E-38 | 30 | 105 | No hit | No description |
PRINTS | PR00404 | 5.6E-26 | 30 | 50 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.45E-29 | 30 | 103 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-24 | 37 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-26 | 50 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-26 | 65 | 86 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.732 | 115 | 202 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.3E-7 | 116 | 188 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MLYFFSINGG SLVLFQLRSL PIIREVKMVR QKIQIKKIDN LTARQVTFSK RRRGLFKKAQ 60 ELSTLCDADI GLIVFSATGK LFEYSSSSMM QLIEKHKVHS ERDMDSPDQL QSFNFQSAKK 120 NYGMLSWEFA EKNRELRQLN GEELQGLGLE ELMKLEKIVE GGISRVMKIK EAQLQEENSQ 180 LKQQSQQARL NEVEGHNAIE GGNSADSITT NRSLVNGHHD YIDSDTSLKL GLPFPY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-18 | 28 | 101 | 1 | 74 | MEF2C |
5f28_B | 2e-18 | 28 | 101 | 1 | 74 | MEF2C |
5f28_C | 2e-18 | 28 | 101 | 1 | 74 | MEF2C |
5f28_D | 2e-18 | 28 | 101 | 1 | 74 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009802200.1 | 1e-141 | PREDICTED: MADS-box protein SVP-like isoform X1 | ||||
Swissprot | Q9FVC1 | 3e-57 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A1U7YTR6 | 1e-140 | A0A1U7YTR6_NICSY; MADS-box protein SVP-like isoform X1 | ||||
STRING | XP_009802200.1 | 1e-141 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA938 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-46 | MIKC_MADS family protein |