PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00376g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 372aa    MW: 41184.3 Da    PI: 8.8122
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00376g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH292e-09190237455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Niben101Scf00376g01004.1 190 SHSLAERVRREKISERMKILQSLVPGC----DKVTGKALMLDEIINYVQSLQ 237
                               8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-17184253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.31E-10184241No hitNo description
Gene3DG3DSA:4.10.280.103.1E-16186248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6190237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAAFSYQLQH TNPFLLDSVF LPSSPIKMSG FLEEQNNSTV QNCFTQFYQP ESFQQLPTAN  60
VIGHESSYCL DQSTNVTLSQ NELNSVTNNS SSSVSLDMDS SSVTDKMESG NKPNFIPMDK  120
KRKSREGSSS MSSAHSKVDN GKKKKNNSQL VAKDEKKGKD DNKKEEKKAN EEAPTGYIHV  180
RARRGQATDS HSLAERVRRE KISERMKILQ SLVPGCDKVT GKALMLDEII NYVQSLQNQV  240
EFLSMKLASS NPMYYDFGMD LDTLMVKPDQ SLSGLGTPLP NMQQPSPTNI TSQAAEVIPN  300
INNSGYPFLD NSASLMFQQA HFPNSISQDS ATTFVLSIKV TPKPCPTEHL HFGKKVLSSK  360
RSGAKTKENS KS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312696.10.0transcription factor bHLH137-like
RefseqXP_009786910.10.0PREDICTED: transcription factor bHLH137
TrEMBLM5BC190.0M5BC19_9SOLA; BHLH trascription factor
STRINGXP_009786910.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-52bHLH family protein