PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00315g00019.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 252aa    MW: 28576.4 Da    PI: 4.5169
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00315g00019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.9e-14645344
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                              ++++eE+   +++ +q+G++ W++Ia +++ gRt++++k++w
  Niben101Scf00315g00019.1  6 KFSAEEERTVIELQAQFGNK-WARIATYLP-GRTDNDVKNFW 45
                              79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.314153IPR017930Myb domain
SMARTSM007173.0E-12351IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-17647IPR009057Homeodomain-like
PfamPF002499.1E-13645IPR001005SANT/Myb domain
CDDcd001671.98E-11645No hitNo description
SuperFamilySSF466896.4E-12660IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSSGVKFSAE EERTVIELQA QFGNKWARIA TYLPGRTDND VKNFWSSRQK KLARIMRTSV  60
PQPSKPQKSN NREPPALQKL PSIERPKLSS LAEERSLSMS QCCPSSYMNN SDTINMVQWP  120
ELVNSTSLAF EPDLLQPEIN PYEKRCFGSQ ISLPFPQIPL QTDFVPPLES QILPMKLEES  180
DFLDFFGQLS ASEIGNVQVP FVPSSCSGPE RSSDIMNVKR EIDIPLTPDS FIDDFPMDMF  240
DHIDPLPSPF NW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630342.11e-164PREDICTED: transcription factor GAMYB-like
RefseqXP_016497849.11e-164PREDICTED: transcription factor GAMYB-like
TrEMBLA0A1S4CA661e-162A0A1S4CA66_TOBAC; transcription factor GAMYB-like
STRINGXP_009630342.11e-163(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42072342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-37MYB family protein