PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00282g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 501aa    MW: 54746.8 Da    PI: 6.8775
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00282g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.9e-08119139526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                C+++ + G C yG++C+F H+
  Niben101Scf00282g01003.1 119 VCNYWVK-GNCTYGNTCRFLHS 139
                               7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.482550IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.2772551IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788114141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-6115139IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5116140IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-6118139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-6118139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.6E-14140282IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.1E-6145184IPR001680WD40 repeat
SuperFamilySSF509981.02E-37148406IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
PfamPF004009.9E-6148184IPR001680WD40 repeat
PROSITE profilePS5029412.974152193IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.084152193IPR001680WD40 repeat
PROSITE patternPS006780171185IPR019775WD40 repeat, conserved site
PRINTSPR003201.2E-6171185IPR020472G-protein beta WD-40 repeat
SMARTSM00320170258294IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.109.7E-29283493IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.018301338IPR001680WD40 repeat
PROSITE profilePS5029417.113308387IPR017986WD40-repeat-containing domain
PROSITE profilePS5008211.912308347IPR001680WD40 repeat
PfamPF004000.038309338IPR001680WD40 repeat
PROSITE patternPS006780325339IPR019775WD40 repeat, conserved site
PRINTSPR003201.2E-6325339IPR020472G-protein beta WD-40 repeat
SMARTSM003201.2E-4341378IPR001680WD40 repeat
PfamPF004003.4E-4343377IPR001680WD40 repeat
PRINTSPR003201.2E-6365379IPR020472G-protein beta WD-40 repeat
SMARTSM003207.2407452IPR001680WD40 repeat
SuperFamilySSF509981.02E-37437497IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
SMARTSM003209.9455492IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MDMDGSKRIF QRLGPHSQGG DNNSNKQQKV CFHWRAGRCN RFPCPFLHRE LPAPPHQQQQ  60
QPHNGMPSSS SKRPHAFSSD YDNRGSAGGG GMRRNPNFNN TWGRTAAGGG AVVRKMEKVC  120
NYWVKGNCTY GNTCRFLHSW TTGDCFTLLT QLEGHQKVVT GIALPSGSDK LYSGSTDKTV  180
RVWDCQSGQC AGVVNFDGEV GCMLSEGPWI FVGLTNLVKA WNTQTGTDLS LDGPVGQVYA  240
LVVGNDMLLA GTEAWNTQTG TDLSLDGPVG QVYALVVGND MLLAGTEDGI LAWKYNGSTN  300
CFEPAAQLKE HTHHVVSLVV GANRLYSGSM DNSIRVWNLE TMQCLQILTG HTSVVMSVLC  360
WDQFLLSCSL DQTIKVWAAN ESGNLEVTYT HQEEKGVLAL CGMHDSEAKP VLLCSCNDKT  420
INGVLALCGM HDSEAKPVLL CSCNDKTIRV YDLPSFSERG KIFSKEVVRR IEIGPGGLFF  480
TGDESGQLRV WKWLTESSST A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A9e-221494558323Tako8
6g6n_A9e-221494558323Tako8
6g6n_B9e-221494558323Tako8
6g6n_C9e-221494558323Tako8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626305.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A1J6K0L10.0A0A1J6K0L1_NICAT; Zinc finger ccch domain-containing protein 48
STRINGXP_009626305.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1