PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00278g05001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 380aa    MW: 42725.5 Da    PI: 4.4164
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00278g05001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19134183255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Niben101Scf00278g05001.1 134 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 183
                               89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-29133190IPR001471AP2/ERF domain
CDDcd000184.21E-33134190No hitNo description
PROSITE profilePS5103223.617134191IPR001471AP2/ERF domain
SMARTSM003803.2E-39134197IPR001471AP2/ERF domain
PfamPF008471.0E-12134183IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-21134191IPR016177DNA-binding domain
PRINTSPR003674.4E-10135146IPR001471AP2/ERF domain
PRINTSPR003674.4E-10157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDHDMLCPIK YTEHRNVIRK VTKPSPVKSK KFPEPQKSNQ YNRSVPPKTV RISVTDPDAT  60
DSSSDEEDQL FGRRRVKKYI NEISIETAVK CEVSMPASGK TAVKKRAADV LQPKQKPMKV  120
KEVQPPQSVG SVRKFRGVRQ RPWGKWAAEI RDPARRVRLW LGTYDTAEEA AMVYDNAAIK  180
LRGPDALTNF LTPPKPEIEV PSNSGYESGN ESRNIPSPTS VLRSRMSQSS EETEQQSRSE  240
PVQEECPSVQ GPMECEQAVQ DVEPFGLPVK QEMEECQGET CMIPDYSDDY LPTDVPFLED  300
FFNFEAAEQT LFEDTTTGFP NDFGTSYNDI SSSGFVNDFL FNDDFGNFDD SFQDLGTLGV  360
DDYFQDIGAD FSSVDSLLAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-21133190159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-21133190462ATERF1
3gcc_A8e-21133190462ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264232.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A314L4X80.0A0A314L4X8_NICAT; Ethylene-responsive transcription factor crf4
STRINGXP_009596437.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-58cytokinin response factor 4