PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00189g05003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 343aa MW: 39079.5 Da PI: 4.3728 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.3 | 6.3e-19 | 53 | 106 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Niben101Scf00189g05003.1 53 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 106 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.6 | 1.2e-41 | 52 | 143 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk+++dalk++ e+L++++e Niben101Scf00189g05003.1 52 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKHNYESLKHDNE 136 69*********************************************************************************** PP HD-ZIP_I/II 86 eLreelk 92 +L +e+ Niben101Scf00189g05003.1 137 ALLKEIL 143 **98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.88E-19 | 43 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.491 | 48 | 108 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.1E-18 | 51 | 112 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.1E-16 | 53 | 106 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.36E-16 | 53 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-20 | 55 | 115 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.0E-5 | 79 | 88 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 83 | 106 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 88 | 104 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.6E-18 | 108 | 148 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MKRPCSSDSL GALMSMCPNT TDEQNHVYST RDFQSMLLDE EGCIEESGHI SEKKRRLSVE 60 QVKALEKNFE VENKLEPERK VKLAQELGLQ PRQVAVWFQN RRARWKTKQL ERDYGVLKAN 120 FDALKHNYES LKHDNEALLK EILELKSKVY TENGESKGVA VKEEAMESES DDHKLIEQSK 180 ANDNNDDNNN NFLENFEEEE EEINFENFNV AAAASTNIFG DNFKDGSSDS DSSAILNEDS 240 SPNAAAISSS GAFLISTNRG NGSSKSSDSL NFCFQFTESS SKSNFGDGQK GNNNYYQPQQ 300 YVKMEEHNFF NGEESCSTLF TDEQAPTLQW YCPEDWNWNW KES |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 108 | RRARWKTKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009777009.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
Refseq | XP_016502437.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
TrEMBL | A0A1S4CMF7 | 0.0 | A0A1S4CMF7_TOBAC; homeobox-leucine zipper protein ATHB-6-like | ||||
TrEMBL | A0A1U7WQP6 | 0.0 | A0A1U7WQP6_NICSY; homeobox-leucine zipper protein ATHB-6-like | ||||
STRING | XP_009777009.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2718 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 1e-64 | homeobox protein 16 |