PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00180g03001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 500aa MW: 57234.1 Da PI: 10.664 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.1 | 1.9e-08 | 12 | 48 | 1 | 38 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 +++W t+E+++l av+++G+++Wk +a+++ Rt + Niben101Scf00180g03001.1 12 KMNWGTWEELILGGAVRRHGTRDWKVVASELR-ARTVY 48 689*****************************.88865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.94E-5 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.446 | 7 | 65 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-5 | 9 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-6 | 12 | 47 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.47E-4 | 14 | 61 | No hit | No description |
SMART | SM00297 | 1.7E-15 | 267 | 371 | IPR001487 | Bromodomain |
CDD | cd04369 | 1.34E-13 | 270 | 366 | No hit | No description |
Gene3D | G3DSA:1.20.920.10 | 3.7E-16 | 270 | 391 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 1.28E-17 | 272 | 371 | IPR001487 | Bromodomain |
Pfam | PF00439 | 3.2E-11 | 276 | 355 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 10.829 | 282 | 352 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MEGETMGVGL RKMNWGTWEE LILGGAVRRH GTRDWKVVAS ELRARTVYPY CFTPEACRTR 60 YEDLRKRYSG CNAWFEELRK RRVEELKREL ERSESSIGFL ESKIESLKAE REQSCQIDYG 120 LSRTVSPAPP TKSEDIESFV KDEAKDGLSA GSFTLDIRTN QSPESQVPTI PSTDVKLERS 180 ESCERDKVPS TSKMTEASNG NGGAVRKRRG KRRRKDTVWD AKEGSIEESD NVCSTSLAST 240 SHCKEALTSC EQSIRHSAAS YHRGGFSRFR NDDLMRIFTS ITQHEAAMVF RHRLDSQKRA 300 RYKKMIRRHM DIETVKSRLA SWSIKTPGEL FRDFLLLANN AMVFYSKRTR EYKAAMTTRD 360 IVTRAYRQHY KGSYYKATSS LLPFPTIGNP PGKPRSVRPR PSKDKLQAKY GNNMKDNIAG 420 KLGRQNHRPG DADSKVPLQS FLSAKKGFKR PGKIKRGPLL ESVKPQTKVQ AKESTQHNIK 480 VKEDHRIKPV TKERKRARQK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 64 | 81 | RKRYSGCNAWFEELRKRR |
2 | 207 | 215 | RRGKRRRKD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009778975.1 | 0.0 | PREDICTED: uncharacterized protein LOC104228236 isoform X1 | ||||
Refseq | XP_016467287.1 | 0.0 | PREDICTED: uncharacterized protein LOC107789922 isoform X1 | ||||
TrEMBL | A0A1S3ZSE7 | 0.0 | A0A1S3ZSE7_TOBAC; uncharacterized protein LOC107789922 isoform X1 | ||||
TrEMBL | A0A1U7WXL3 | 0.0 | A0A1U7WXL3_NICSY; uncharacterized protein LOC104228236 isoform X1 | ||||
STRING | XP_009778975.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5534 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42150.1 | 4e-25 | DNA-binding bromodomain-containing protein |