PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00149g02005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 92aa MW: 10335.2 Da PI: 10.0228 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 82.2 | 5.6e-26 | 23 | 73 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+rl+Wt++LH+ F + v+qLGG+e+AtPk il++m+++gLt+ hvkSHLQ Niben101Scf00149g02005.1 23 KERLKWTQQLHDLFEKGVTQLGGPERATPKGILKVMGIEGLTIFHVKSHLQ 73 68************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.76E-14 | 20 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.305 | 20 | 80 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-23 | 21 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-21 | 23 | 75 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.6E-8 | 25 | 75 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MPGKFKELLS SNMGSNRSDC SSKERLKWTQ QLHDLFEKGV TQLGGPERAT PKGILKVMGI 60 EGLTIFHVKS HLQVVLISLV IISFLIAYNF YL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-20 | 23 | 73 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-20 | 23 | 73 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-20 | 23 | 73 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-20 | 23 | 73 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009799173.1 | 1e-46 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Swissprot | Q9SJW0 | 2e-22 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A1U7Y7T1 | 3e-45 | A0A1U7Y7T1_NICSY; protein PHR1-LIKE 1-like | ||||
TrEMBL | A0A314KT66 | 2e-45 | A0A314KT66_NICAT; Myb family transcription factor phl7 | ||||
STRING | XP_009799173.1 | 4e-46 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10101 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-21 | G2-like family protein |