PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00136g01010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 264aa MW: 30466.2 Da PI: 6.0545

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00136g01010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.4	1.2e-48	16	135	1	122
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+++yL +kv ++++ + ++i e+d +k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat+sgyWka Niben101Scf00136g01010.1 16 LPPGFRFHPTDEELISHYLFHKVVDSSFCA-RAIGEADFNKIEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATESGYWKA 99 79***********************998.89***********888999*************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWv 122 tgkdke+++ ++lvg+kktLvfy+grap+g+k++W Niben101Scf00136g01010.1 100 TGKDKEIFK-LKTLVGMKKTLVFYQGRAPRGQKSNWS 135 ****9.899*********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-51	13	134	IPR003441	NAC domain
PROSITE profile	PS51005	45.343	16	163	IPR003441	NAC domain
Pfam	PF02365	1.2E-23	17	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MEKFSGFCGN EEEMELPPGF RFHPTDEELI SHYLFHKVVD SSFCARAIGE ADFNKIEPWD 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATESGYWKAT GKDKEIFKLK TLVGMKKTLV 120 FYQGRAPRGQ KSNWSAGGKK IHISGLIKNN NINDNSMSSN LPPLMDISSY DSQITTTTTC 180 KGETSNYSHV TCFSNSIEDK KPQTSLADDL STNNNPYVEN FQYGDFGLMQ EQSILRLLFE 240 NKESEAKQNY DMRAYEDLDC LWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-45	11	134	10	133	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009592902.1	1e-179	PREDICTED: NAC domain-containing protein 92-like
Refseq	XP_016490965.1	1e-179	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	2e-85	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1S4BQ12	1e-178	A0A1S4BQ12_TOBAC; NAC domain-containing protein 92-like
STRING	XP_009592902.1	1e-179	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	2e-86	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]