PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00073g04002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HSF | ||||||||
Protein Properties | Length: 408aa MW: 46411.5 Da PI: 4.9412 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112 | 4e-35 | 14 | 106 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX. CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks. 85 Fl+k+ye+++d++ + ++sws++++sf+v+++ +fa+++Lp+yFkh+nf+SF+RQLn+YgF+kv+ e+ weF+++ Niben101Scf00073g04002.1 14 FLTKTYEMVDDPSSDAIVSWSSSNKSFIVWNPPDFARDLLPRYFKHNNFSSFIRQLNTYGFRKVDPEK---------WEFANEDn 89 9****************************************************************999.........*****988 PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 86 Fkkgkkellekikrkks 102 F +g+ +ll++i+r+k Niben101Scf00073g04002.1 90 FVRGQPHLLKNIHRRKP 106 **************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.3E-62 | 10 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.75E-35 | 10 | 104 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.0E-38 | 11 | 104 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.9E-20 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.6E-31 | 14 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.9E-20 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.9E-20 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MDEATCSTNA LPPFLTKTYE MVDDPSSDAI VSWSSSNKSF IVWNPPDFAR DLLPRYFKHN 60 NFSSFIRQLN TYGFRKVDPE KWEFANEDNF VRGQPHLLKN IHRRKPVHSH SAQNLHGLFS 120 PLTESERQGY KEDIQKLKHE NESLHLDLQR HQQDRQGLEL QMQVFTERVQ HVEHRQKTML 180 SALARMLDKP VTDLSRMPQT QVNDRKRRLP GNSCLYNETD LEDARAISSR ALTWENMNPS 240 SLLTINTELL DQLDSSLTFW ENVLQDVDQV RIQQNCSLEL DESTSCADSP AISYTQLNVD 300 VGPKASDIDM NSEPNANTNP EVAAPEDQAA AAGTTTNVPT GVNDVFWEQF LTENPGSVDV 360 SEVQSERKDI GNKKNESKPV DGGKFWWNMK SVNSLAEQLG HLTPAEKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-24 | 11 | 104 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-24 | 11 | 104 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-24 | 11 | 104 | 26 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 203 | 208 | DRKRRL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019264685.1 | 0.0 | PREDICTED: heat stress transcription factor A-4c-like | ||||
TrEMBL | A0A314L506 | 0.0 | A0A314L506_NICAT; Heat stress transcription factor a-4a | ||||
STRING | XP_009796383.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3448 | 23 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 1e-114 | heat shock transcription factor A4A |