PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00024g02023.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 334aa    MW: 37555.9 Da    PI: 6.7016
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00024g02023.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-1369110346
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               ++T++E+el++++++  G++ W+ Ia+ ++ gRt++++k+ w++
  Niben101Scf00024g02023.1  69 SFTPQEEELIIKLHATIGSR-WSIIAQQIP-GRTDNEVKNLWNT 110
                               79******************.*********.**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00717151463IPR001005SANT/Myb domain
SuperFamilySSF466892.94E-1819108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-112068IPR009057Homeodomain-like
PROSITE profilePS500906.2142061IPR017877Myb-like domain
PROSITE profilePS5129418.62862116IPR017930Myb domain
SMARTSM007173.0E-1166114IPR001005SANT/Myb domain
PfamPF002491.8E-1269110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-2169116IPR009057Homeodomain-like
CDDcd001671.51E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGRPPCCSDK MHNRRCNWME EDANTSTFVS RHGIGNWTAM SKKSGTGKCG RSQKHRWSNR  60
LKTDIKEDSF TPQEEELIIK LHATIGSRWS IIAQQIPGRT DNEVKNLWNT KLKKKLSAMG  120
IDPVTHKPFS QILTDYGNIG GFPKARTRFV SLNRELKGAF MSTPEQLQHP LERFQNFNSH  180
CVTTIRLQKT ETSEDCFLSN NYESSNNQPP VDLLSELQAI QFVTESSNNN SPKAIFSYTN  240
PVDNDCSLSS PLSSSSSSSA SHSLNKNQVN WCDYLLDDAF QEDTLNIEEK LVSGAAQEYR  300
QKNAPTMEDF EATLCTKGTS PSSSFVEDML GCEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-192011613108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800479.10.0PREDICTED: myb-related protein 315-like
RefseqXP_016507340.10.0PREDICTED: transcription factor MYB35-like
TrEMBLA0A1S4D1M50.0A0A1S4D1M5_TOBAC; transcription factor MYB35-like
TrEMBLA0A1U7YML80.0A0A1U7YML8_NICSY; myb-related protein 315-like
STRINGXP_009800479.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA123481922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-46MYB family protein