PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00022g01003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 545aa MW: 62467.8 Da PI: 5.7546

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00022g01003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.5	9.6e-20	423	496	1	71
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnk..rykkikegekkr 71 rW++ ev aLi++r+++e+++++ + k+ lWee+s+ m++ gfe+s+ +Ckekwen++k kk+ke+ +++ Niben101Scf00022g01003.1 423 RWPQAEVEALIQIRNNLESKFQEaAGPKGVLWEEISNSMASMGFEKSARRCKEKWENMHKcsTVKKTKEITREQ 496 8*******************9356999***************************9944467777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.853	416	481	IPR017877	Myb-like domain
Pfam	PF13837	5.2E-14	422	483	No hit	No description
CDD	cd12203	2.88E-20	422	482	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MQSDYEMAGI HHQRNRNQQP QVEQQQQQQQ HRFIMENAST SSPFFPINYN HHYPPQQPNP 60 LLQPFTQQFF QYQHLHYRSI LEQQQHQDIR LELNAEGENH QVQGVSVPFF PLSFKGDSSG 120 KGERGEDDLI RGSEGYCNEA RQTSLAVSHC WQNQEDSAIK QPFWKPLCAE FSNRNNNNSN 180 ESEKNKQEED QEMYPDEIHQ QQIIKSLEEN KCRVVFGELE AIYATNADNT NTTNIHRIAS 240 ESVLTAEDLP INNNNNVSFP VATFNDSNQT SGPTAIATTT PAAIDIGSES TSVGEATRED 300 EVHNKSKRRR KAKEGTSITM ARFFESLIKK LVKHQEALQM RFMETIERLD QERKEREETW 360 REQELAKLQK EAAVRAQERT LSSNREAALV SYLEKLTGQK INFQKESEPD KSCNSLVKLN 420 NKRWPQAEVE ALIQIRNNLE SKFQEAAGPK GVLWEEISNS MASMGFEKSA RRCKEKWENM 480 HKCSTVKKTK EITREQLNDG NNSIDFVIQG NDTVEDHLGT VNLTEGNNGN SEKDKHGNGE 540 NKNGN

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MQSDYEMAGI HHQRNRNQQP QVEQQQQQQQ HRFIMENAST SSPFFPINYN HHYPPQQPNP  60
LLQPFTQQFF QYQHLHYRSI LEQQQHQDIR LELNAEGENH QVQGVSVPFF PLSFKGDSSG  120
KGERGEDDLI RGSEGYCNEA RQTSLAVSHC WQNQEDSAIK QPFWKPLCAE FSNRNNNNSN  180
ESEKNKQEED QEMYPDEIHQ QQIIKSLEEN KCRVVFGELE AIYATNADNT NTTNIHRIAS  240
ESVLTAEDLP INNNNNVSFP VATFNDSNQT SGPTAIATTT PAAIDIGSES TSVGEATRED  300
EVHNKSKRRR KAKEGTSITM ARFFESLIKK LVKHQEALQM RFMETIERLD QERKEREETW  360
REQELAKLQK EAAVRAQERT LSSNREAALV SYLEKLTGQK INFQKESEPD KSCNSLVKLN  420
NKRWPQAEVE ALIQIRNNLE SKFQEAAGPK GVLWEEISNS MASMGFEKSA RRCKEKWENM  480
HKCSTVKKTK EITREQLNDG NNSIDFVIQG NDTVEDHLGT VNLTEGNNGN SEKDKHGNGE  540
NKNGN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009782860.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
TrEMBL	A0A1U7X8T0	0.0	A0A1U7X8T0_NICSY; trihelix transcription factor GT-2-like
STRING	XP_009782860.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11622	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-33	Trihelix family protein