PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf00021g01016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 231aa MW: 26234.6 Da PI: 9.6996 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 106.6 | 1.5e-33 | 46 | 103 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v+YkeClkNhAas+Ggh+vDGCgEf+ps++++ +++++lkC ACgCHRnFHRre+++ Niben101Scf00021g01016.1 46 VVTYKECLKNHAASIGGHTVDGCGEFIPSPDATvADPTSLKCDACGCHRNFHRREPDD 103 689******************************9*********************876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.8E-28 | 47 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-22 | 47 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.5E-30 | 48 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.749 | 49 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-28 | 125 | 194 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.07E-18 | 126 | 193 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.3E-24 | 132 | 188 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MASTCSIPTP TPIPTKTQLP LKPLSFTNVT SKKHHQVHNH QPRSAVVTYK ECLKNHAASI 60 GGHTVDGCGE FIPSPDATVA DPTSLKCDAC GCHRNFHRRE PDDDFMDFRH HHAQVATPAT 120 PTALKPENPR RRRRFRTKFS QEQKNKMYSF SEKLGWKLQK CDEAMVEEFC NEIGVVKGVF 180 RVWMHNNKST LGKKDFQNAN NSTRPYPTTT NSNLDHSTRL YSIENNGFNI K |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-19 | 133 | 190 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009788413.1 | 1e-132 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Refseq | XP_016439200.1 | 1e-132 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9LXG0 | 4e-56 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A1S3XGW0 | 1e-131 | A0A1S3XGW0_TOBAC; zinc-finger homeodomain protein 9-like | ||||
TrEMBL | A0A1U7XC14 | 1e-131 | A0A1U7XC14_NICSY; zinc-finger homeodomain protein 9-like | ||||
STRING | XP_009788413.1 | 1e-131 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69600.1 | 2e-52 | zinc finger homeodomain 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|