PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Ctg15705g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 345aa MW: 38481.4 Da PI: 6.3177 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.1 | 3.3e-16 | 96 | 141 | 3 | 52 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 kGVr +k +g+++AeIrdps+ kr++lg+f+t + Aa+a++a + + Niben101Ctg15705g00004.1 96 PKGVRMRK-WGKYAAEIRDPSQ---GKRIWLGTFDTVKAAAEAYDAKKAE 141 79****99.**********964...3*******************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.57E-15 | 95 | 142 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.49 | 95 | 157 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.9E-10 | 95 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 96 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-14 | 97 | 151 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.4E-20 | 97 | 142 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.66E-19 | 97 | 137 | No hit | No description |
PRINTS | PR00367 | 1.4E-6 | 118 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MSNKERVNDG CVGSVRKVRI IYDDPDATES ESENDDNTCN VVRIKRIVKE INVSSASLEK 60 KDFEKCPIRS SNKSLENKNR NGLENKRVQI KSSSLPKGVR MRKWGKYAAE IRDPSQGKRI 120 WLGTFDTVKA AAEAYDAKKA EFDRRILSER GKNLSSPQAP PECSTACSSH PTNRTSSLYS 180 HPSPSSVLDV PNSSAAAAVE CIDIPMKDKN PVPVLEVEQP AVECIDILDF NPKFEDQMLY 240 KDPLIEQGTI SNSLAEMTEF NITKKTKARQ PTIKICQKST KGIEDRHLNC TDQSITPPSI 300 SAELNMMNFE ETAVSGNNLK LLGFDENALF GKDFSQTFDP YTDFV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019244158.1 | 0.0 | PREDICTED: uncharacterized protein LOC109224066 | ||||
TrEMBL | A0A1J6IKV8 | 0.0 | A0A1J6IKV8_NICAT; Ethylene-responsive transcription factor crf3 | ||||
STRING | XP_009791614.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12718 | 15 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 5e-17 | cytokinin response factor 4 |