PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg13774g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 194aa    MW: 22204.7 Da    PI: 4.6153
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg13774g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.42.8e-3681271128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++PwdL+ k+ ae ++wyf+s+r +        +r+t +gyWk+
  Niben101Ctg13774g00001.1   8 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLDGKAMAEGNKWYFYSRRTQ--------SRITGNGYWKS 83 
                               79*************************999.99**************977778899******9854........799******** PP

                       NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                g d+++ls+ +  +vg+kk  +fy g+ p+g+kt+W+m+e++l
  Niben101Ctg13774g00001.1  84 LGLDEPILSSsSCDKVGIKKYYAFYIGEPPEGVKTNWIMQEFSL 127
                               ********9855677***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-475160IPR003441NAC domain
PROSITE profilePS5100545.0378162IPR003441NAC domain
PfamPF023651.0E-209127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGDNNVNLPP GFRFYPTDEE LVVHFLHRKA ALLPCHPDVI PDLDLYPYDP WDLDGKAMAE  60
GNKWYFYSRR TQSRITGNGY WKSLGLDEPI LSSSSCDKVG IKKYYAFYIG EPPEGVKTNW  120
IMQEFSLSDS SSSSGTSRSS SRRRSRSKID YSKWVICRVQ ERNCDNDDDD GPELSCLDEV  180
FLSLDDLDEI SLPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-40416313166NO APICAL MERISTEM PROTEIN
1ut4_B2e-40416313166NO APICAL MERISTEM PROTEIN
1ut7_A2e-40416313166NO APICAL MERISTEM PROTEIN
1ut7_B2e-40416313166NO APICAL MERISTEM PROTEIN
3swm_A3e-40416316169NAC domain-containing protein 19
3swm_B3e-40416316169NAC domain-containing protein 19
3swm_C3e-40416316169NAC domain-containing protein 19
3swm_D3e-40416316169NAC domain-containing protein 19
3swp_A3e-40416316169NAC domain-containing protein 19
3swp_B3e-40416316169NAC domain-containing protein 19
3swp_C3e-40416316169NAC domain-containing protein 19
3swp_D3e-40416316169NAC domain-containing protein 19
4dul_A2e-40416313166NAC domain-containing protein 19
4dul_B2e-40416313166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762857.11e-122PREDICTED: NAC transcription factor 25 isoform X1
RefseqXP_016458989.11e-122PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK64e-89NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A1S3Z3I71e-121A0A1S3Z3I7_TOBAC; NAC domain-containing protein 104-like
TrEMBLA0A1U7V3R31e-121A0A1U7V3R3_NICSY; NAC transcription factor 25 isoform X1
STRINGXP_009762857.11e-122(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-75xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]