PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Ctg12118g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 423aa MW: 46543.6 Da PI: 4.5995

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Ctg12118g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	283.1	8.1e-87	180	422	1	254
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 lv++L++cAeav++++l+ a+al+ ++ la ++ +m+++a+yf+eALa+r+++ + p+++ e++ +++l++ f+ Niben101Ctg12118g00001.1 180 LVHTLMACAEAVQQENLNVADALVRHIGILAVSQSGAMRKVATYFAEALARRIYK--------IYPQDSIESSYTDVLQM--HFY 254 689**************************************************........44666654445555544..4 PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170 e++P+lkf+h+taNqaIlea+ ++++vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae Niben101Ctg12118g00001.1 255 ETCPYLKFAHFTANQAILEAFTNCNKVHVIDFSLKQGMQWPALIQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAE 339 *********************************************************************************** PP GRAS 171 elgvpfefnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252 ++gv+fef+ +v+++l+dl+ e L++++ E++aVn+v++lhrll++++++e+ vL+ +k+++Pk+v++veqea+hn++ Niben101Ctg12118g00001.1 340 TIGVEFEFRGFVTNSLADLDAEILDLRSstvTEVVAVNSVFELHRLLARPGAVEK----VLNSIKQMNPKIVTIVEQEANHNASV 420 ********************9999999********************....***********************9 PP GRAS 253 Fl 254 Fl Niben101Ctg12118g00001.1 421 FL 422 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12041	1.8E-35	32	98	IPR021914	Transcriptional factor DELLA, N-terminal
SMART	SM01129	3.1E-36	32	105	No hit	No description
PROSITE profile	PS50985	49.563	154	423	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-84	180	422	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MKRDRDRENS QDGSSSGKSK IFEEEQPDAG MDELLAVLGY KVKSSDMAEV AQKLEQLEMA 60 MCTTFEDGIS HLSTDTVHKN PSDLSGWVQS MLSELNNTSV PSNFDMIGSI EEKDLGESSS 120 SIVMNEENRI ISDDDLRAIP GGAVFATESN KRQRSCVTLT ADATTRPVVL VDSQETGVRL 180 VHTLMACAEA VQQENLNVAD ALVRHIGILA VSQSGAMRKV ATYFAEALAR RIYKIYPQDS 240 IESSYTDVLQ MHFYETCPYL KFAHFTANQA ILEAFTNCNK VHVIDFSLKQ GMQWPALIQA 300 LALRPGGPPA FRLTGIGPPQ PDNTDALQQV GWKLAQLAET IGVEFEFRGF VTNSLADLDA 360 EILDLRSSTV TEVVAVNSVF ELHRLLARPG AVEKVLNSIK QMNPKIVTIV EQEANHNASV 420 FLD

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MKRDRDRENS QDGSSSGKSK IFEEEQPDAG MDELLAVLGY KVKSSDMAEV AQKLEQLEMA  60
MCTTFEDGIS HLSTDTVHKN PSDLSGWVQS MLSELNNTSV PSNFDMIGSI EEKDLGESSS  120
SIVMNEENRI ISDDDLRAIP GGAVFATESN KRQRSCVTLT ADATTRPVVL VDSQETGVRL  180
VHTLMACAEA VQQENLNVAD ALVRHIGILA VSQSGAMRKV ATYFAEALAR RIYKIYPQDS  240
IESSYTDVLQ MHFYETCPYL KFAHFTANQA ILEAFTNCNK VHVIDFSLKQ GMQWPALIQA  300
LALRPGGPPA FRLTGIGPPQ PDNTDALQQV GWKLAQLAET IGVEFEFRGF VTNSLADLDA  360
EILDLRSSTV TEVVAVNSVF ELHRLLARPG AVEKVLNSIK QMNPKIVTIV EQEANHNASV  420
FLD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-40	175	421	14	260	Protein SCARECROW
5b3h_A	2e-40	175	421	13	259	Protein SCARECROW
5b3h_D	2e-40	175	421	13	259	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269\|PubMed:15347801}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019232709.1	0.0	PREDICTED: LOW QUALITY PROTEIN: DELLA protein GAI-like
Swissprot	Q7Y1B6	0.0	GAI_SOLLC; DELLA protein GAI
TrEMBL	M9N8J9	0.0	M9N8J9_NICAT; ELLA domain GRAS family transcription factor
STRING	XP_009796771.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2126	24	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	1e-173	GRAS family protein

Publications ? help Back to Top
Nir I, et al. The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure. Plant Cell, 2017. 29(12): p. 3186-3197 [PMID:29150547]