PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Ctg06121g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 189aa MW: 21797.2 Da PI: 7.1628 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.7 | 4.2e-08 | 144 | 164 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G C+ Gd+C FaHg Niben101Ctg06121g00002.1 144 ACPEFRK-GNCRKGDSCEFAHG 164 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 9.4E-6 | 139 | 165 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-5 | 139 | 168 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.479 | 140 | 166 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-5 | 144 | 166 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-6 | 144 | 164 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MMIGERNHPY PTVHIPPWSY GDNQTDNMHL TLSPSSNANS SPSFSAASGE DYSMFLQNDT 60 GLKALQRYLP FNDVVGDFDF EYGDGRDVDL PVDEYSCDQF RMYEFKVRKC ARGKSHDWTE 120 CPYAHPGEKA RRRDPLKYHY SGTACPEFRK GNCRKGDSCE FAHGVFECWL HPARYRTQPC 180 KDGLNCKRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009791791.1 | 1e-136 | PREDICTED: zinc finger CCCH domain-containing protein 20-like | ||||
Swissprot | Q9M0G2 | 7e-73 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A1U7XQ97 | 1e-135 | A0A1U7XQ97_NICSY; zinc finger CCCH domain-containing protein 20-like | ||||
STRING | XP_009791791.1 | 1e-135 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1857 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 5e-74 | C3H family protein |
Publications ? help Back to Top | |||
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