PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g468380.1
Common NameMTR_8g468380
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 437aa    MW: 49390.4 Da    PI: 8.6986
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g468380.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.1e-152468348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      WT+eEd++l + +  +G+++W+tIa+++   +t  qc+ rw++yl
  Medtr8g468380.1 24 TWTQEEDDILREQIGNHGTENWATIASKFK-DKTTRQCRRRWYTYL 68
                     6****************************9.*************97 PP
2Myb_DNA-binding43.76.5e-1474117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g WT++Ed ll +a k +G++ W+ Ia+ +  gRt++ +k+r+ +
  Medtr8g468380.1  74 KGGWTPDEDILLCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFST 117
                      688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.3761772IPR017930Myb domain
SuperFamilySSF466891.42E-2521115IPR009057Homeodomain-like
SMARTSM007173.7E-122170IPR001005SANT/Myb domain
CDDcd001672.49E-122468No hitNo description
PfamPF139216.3E-162585No hitNo description
Gene3DG3DSA:1.10.10.606.3E-202576IPR009057Homeodomain-like
PROSITE profilePS5129416.0273123IPR017930Myb domain
SMARTSM007173.0E-1473121IPR001005SANT/Myb domain
CDDcd001674.99E-1077118No hitNo description
Gene3DG3DSA:1.10.10.602.4E-1777121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDTKKEKQQG NQESSTKKER HIVTWTQEED DILREQIGNH GTENWATIAS KFKDKTTRQC  60
RRRWYTYLNV NFKKGGWTPD EDILLCEAQK IFGNRWTEIA KVVSGRTDNA VKNRFSTLHK  120
KRGKNDIDSN SKRNISYQGY NTDAMSESAM PVKRTRTAHI PDDAKMINIG DRSHLRNAIS  180
INQQPRAPLA ELAQQSNNVN NFPDRHHVSN DKFNSSGRNN KYELKKDDPK ISALIQIIDS  240
ENMERVWKPL LEFLSQTDII GEKIAVLQLV SHTVKEFKSS NERGHSRLRQ IKPDKDCSGS  300
SEYSTGLTLQ HKSTCTGDNL ESALNQDTGT EIQATQLGVK KEVCEGVKEV LSTGKVEQDT  360
IPNCDEQIIA SPRMECSPLQ VTPIFRSLAE GIPTPEFTDS EKSFLRKTLG VESPSISTNV  420
NPYKPPPCVR ALQYNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-252512210107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.112295e-96leaf| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g468380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445757.10.0transcription factor MYB124
RefseqXP_024627595.10.0transcription factor MYB124
TrEMBLA0A072TSE80.0A0A072TSE8_MEDTR; Myb transcription factor
STRINGGLYMA02G02310.11e-161(Glycine max)
STRINGXP_007153822.11e-160(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34803461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.21e-112MYB family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]