PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g463140.1 | ||||||||
Common Name | MTR_8g463140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | SBP | ||||||||
Protein Properties | Length: 181aa MW: 20625.2 Da PI: 9.198 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.7 | 2.9e-42 | 64 | 141 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+e+C adl++ak+yhrrhkvCe+hskapvv+v+g++qrfCqqCsrfh+l efDe+krsCrrrLa+hnerrrk+++ Medtr8g463140.1 64 CCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGMRQRFCQQCSRFHDLVEFDESKRSCRRRLAGHNERRRKTNP 141 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.7E-35 | 57 | 126 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.46E-40 | 62 | 143 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.624 | 62 | 139 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.0E-31 | 65 | 138 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MEARSIERKR TLMMEKMRRN NMVEEEMENE VEEEEGDVSL TEEEKKKGVG GGRRGGGGGV 60 SPPCCQAERC GADLTDAKRY HRRHKVCEFH SKAPVVVVAG MRQRFCQQCS RFHDLVEFDE 120 SKRSCRRRLA GHNERRRKTN PETANEGSSH SKGQHQPKET QCRIQMNLPG SSGYKSFNIR 180 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-36 | 55 | 138 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 50 | 58 | GGRRGGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g463140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013445497.1 | 1e-130 | squamosa promoter-binding protein 1 | ||||
Swissprot | Q38740 | 7e-43 | SBP2_ANTMA; Squamosa promoter-binding protein 2 | ||||
TrEMBL | A0A072TRQ4 | 1e-129 | A0A072TRQ4_MEDTR; Putative transcription factor SBP family | ||||
STRING | XP_004510032.1 | 7e-89 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 2e-40 | squamosa promoter binding protein-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g463140.1 |
Entrez Gene | 25502503 |
Publications ? help Back to Top | |||
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