PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g442410.1
Common NameMTR_051s0020, MTR_8g442410
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 537aa    MW: 60329.3 Da    PI: 4.5823
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g442410.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.76.6e-1121525251374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsP 89 
                      lv++Ll+cAeav  +d+++a+ lL ++  l+s++gd++qR+ ++f+ AL+ rl+   +++++  + +++++++      +++l a++l+++++P
  Medtr8g442410.1 152 LVHTLLACAEAVGCRDNNQADLLLGKILALSSSSGDSLQRVSFCFATALKCRLSLYPQNVFSNSTLTTSTSNDvslitRENKLEAFQLLYQTTP 245
                      689***************************************************98888888777777776667788888899999******** PP

             GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                      +++f++++aN+aI +  +g++ +HiiD+++++ lQWp+L+++LasRpegpp+lRiTg++  +++++ +l++  +   + A +lg+ +ef+++ +
  Medtr8g442410.1 246 YITFGFMAANEAICQGSKGKSSIHIIDLGMEHALQWPSLIRSLASRPEGPPKLRITGFST-NEENNAKLRASMNLHVEEALSLGIVLEFRIISE 338
                      ************************************************************.55688888888888889*************844 PP

             GRAS 184 k.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                        + + l++e+L +++gEal Vn++l+lh+ ++es    +   ++L+ +k+lsP  ++vveq+++hn++ Fl rfle+l+yysa+fdslea++p
  Medtr8g442410.1 339 PaTPSLLTIENLGLREGEALFVNSILKLHKYVKESRGYLK---SILQSIKKLSPIALTVVEQDTNHNGPFFLGRFLESLHYYSAIFDSLEASMP 429
                      4488999*************************88877776...9************************************************** PP

             GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                      r+s  r+k+Er  +++ei+n+vaceg +r erhe++ +Wr++l++aGF+ +pl+   ++qa+++l+ ++ dgy++ +e+g+l+lgWk+rp++++
  Medtr8g442410.1 430 RNSPIRMKIERIHFAEEICNIVACEGPDRMERHERVDQWRRQLGRAGFQVMPLK--CTSQARMMLSVYDCDGYTLSCEKGCLLLGWKGRPIMMA 521
                      *****************************************************7..679*********************************** PP

             GRAS 371 SaWr 374
                      SaW+
  Medtr8g442410.1 522 SAWQ 525
                      ***6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.7126507IPR005202Transcription factor GRAS
PfamPF035142.3E-109152525IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MWLSFYMNES VNLDFPIRRF CPARMEQDQE GECHDQETIL DDVELCTFDT TTTSCLLPSS  60
EVDDFVDSFI NMDQYSDHES QEKNHQSQSF DHNFLVNDDV FGYDPTTMED EELEICENTT  120
ITMEDEEVEM NGNFGAIPQS QASLGMNQGL DLVHTLLACA EAVGCRDNNQ ADLLLGKILA  180
LSSSSGDSLQ RVSFCFATAL KCRLSLYPQN VFSNSTLTTS TSNDVSLITR ENKLEAFQLL  240
YQTTPYITFG FMAANEAICQ GSKGKSSIHI IDLGMEHALQ WPSLIRSLAS RPEGPPKLRI  300
TGFSTNEENN AKLRASMNLH VEEALSLGIV LEFRIISEPA TPSLLTIENL GLREGEALFV  360
NSILKLHKYV KESRGYLKSI LQSIKKLSPI ALTVVEQDTN HNGPFFLGRF LESLHYYSAI  420
FDSLEASMPR NSPIRMKIER IHFAEEICNI VACEGPDRME RHERVDQWRR QLGRAGFQVM  480
PLKCTSQARM MLSVYDCDGY TLSCEKGCLL LGWKGRPIMM ASAWQVASLS YTDRAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5915952426378Protein SCARECROW
5b3h_A1e-5915952425377Protein SCARECROW
5b3h_D1e-5915952425377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g442410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445133.20.0DELLA protein RGL1
TrEMBLA0A396GM970.0A0A396GM97_MEDTR; Putative transcription factor GRAS family
TrEMBLG7ZX600.0G7ZX60_MEDTR; GRAS family transcription factor
STRINGAES837980.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132512730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-80RGA-like 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]