PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g442330.1 | ||||||||
Common Name | MTR_8g442330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ZF-HD | ||||||||
Protein Properties | Length: 140aa MW: 15756.8 Da PI: 7.4626 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 50.6 | 4.4e-16 | 14 | 51 | 15 | 53 |
ZF-HD_dimer 15 aslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFH 53 s+Gg+++DGC+Ef+p+ g+eg ++ +kC+AC CH+nFH Medtr8g442330.1 14 SSIGGYSLDGCREFLPA-GAEGATNFFKCTACKCHKNFH 51 589*************9.999****************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 14.239 | 5 | 54 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-9 | 14 | 51 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.5E-15 | 15 | 51 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-12 | 90 | 139 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.17E-6 | 93 | 139 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MLPENVTVFN GKYSSIGGYS LDGCREFLPA GAEGATNFFK CTACKCHKNF HCIVPATNLV 60 VPSKNGIHIS WEELEENVHV RNVEPINDDG RDGARQGTSN SNKWFRTKFT HEQRKKMLDF 120 AMTLGWKTKK NDENVVEEF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g442330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013445128.1 | 1e-102 | zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A072TNS1 | 1e-100 | A0A072TNS1_MEDTR; Putative transcription factor ZF-HD family | ||||
STRING | AET02741 | 1e-35 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 4e-22 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g442330.1 |
Entrez Gene | 25502335 |
Publications ? help Back to Top | |||
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