PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g107210.1
Common NameMTR_8g107210
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WOX
Protein Properties Length: 359aa    MW: 40851.6 Da    PI: 9.3377
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g107210.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.83.3e-2295154357
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  Medtr8g107210.1  95 SRWNPTPEQLRALEELYRRgTRTPSAEQIQQITAQLrkfgKIEGKNVFYWFQNHKARERQ 154
                      7*****************99**************************************97 PP
2Wus_type_Homeobox115.33e-3794156365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+
    Medtr8g107210.1  94 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRKFGKIEGKNVFYWFQNHKARERQKR 156
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.8E-592159IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.2E-995154IPR009057Homeodomain-like
PfamPF000466.3E-2095154IPR001356Homeobox domain
SuperFamilySSF466897.89E-1395161IPR009057Homeodomain-like
CDDcd000861.55E-696156No hitNo description
PROSITE profilePS5007111.451100155IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MWMVGYNEGG EFNMADYPFS GRKLRPLIPR PVPVPTTSPN NTSTITPSLN RIHGGNDLFS  60
QYHHNLQQQA SVGDHSKRSE LNNNNNPSAA VVVSSRWNPT PEQLRALEEL YRRGTRTPSA  120
EQIQQITAQL RKFGKIEGKN VFYWFQNHKA RERQKRRRQM ESAAAEFDSA LEKKDLGASR  180
TVFEVEHTKN WLPSTNSSTS TLHLAEESVS IQRSAAAAKA DGWLQFDEAE LQQRRNFMER  240
NATWHMMQLT SSCPTASMST TTTVTTRLMD PKLIKTHELN LFISPHTYKE RENAFIHLNT  300
SSTHQNESDQ TLQLFPIRNG DHGCTDHHHH HNIIKETQIS ASAINAPNQF IEFLPLKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g107210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2762520.0JF276252.1 Medicago truncatula STENOFOLIA (STF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003631107.10.0WUSCHEL-related homeobox 1
TrEMBLG7LDD40.0G7LDD4_MEDTR; Putative transcription factor Homobox-WOX family
STRINGAET055830.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.12e-49WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]