PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g102100.1
Common NameMTR_8g102100
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 382aa    MW: 42602.5 Da    PI: 6.722
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g102100.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-08127146626
                      -SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                      C++f++ G Ck Gd+C FaHg
  Medtr8g102100.1 127 CPDFRK-GSCKKGDSCEFAHG 146
                      ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.85E-5120150IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5121147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.967121148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-6121148IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-6127146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-4153185IPR000571Zinc finger, CCCH-type
SMARTSM0035619156179IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.465156180IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MMLGEPPHRT NPTVHVPPWP TLNNPTAEIF SPLTSNDDYS QFYMQEALSA FQHYVNENND  60
SDSDSEIFPT HESVDSYSND HFRMFEFKIR RCARGRSHDW TECPFSHPGE KARRRDPRKY  120
NYSGTSCPDF RKGSCKKGDS CEFAHGVFEC WLHPSRYRTQ PCKDGTSCRR PVCFFAHTTE  180
QLRAPTQQSP RSVPSVDSYD GSPLRLAFES SCVKTLQFMS SPGSVSPPVE SPPMSPMTRS  240
LGRSVGSSSV NEMVASLRNL QLGTMKSLPS SWNVQMGSPR FGSPRGPVIR PGFCSLPSTP  300
TQVPSRGRVN HFDLWDQSCE EEPVMERVES GRDIRVKMFE KLSKENSFNG SGMGSGSGLG  360
EVVEDPDVGW VSELVSPFLG D*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.116450.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g102100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447660.0AC144766.18 Medicago truncatula clone mth2-17c2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447300.10.0zinc finger CCCH domain-containing protein 49
SwissprotQ9M0G21e-128C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A072TV590.0A0A072TV59_MEDTR; Putative transcription factor C3H family
STRINGXP_004503514.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-116C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]