PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g098275.2
Common NameMTR_8g098275
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 509aa    MW: 57225.6 Da    PI: 6.4453
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g098275.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.8e-15308354455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h   ErrRR+++N++f +Lr+++P++      K +K++iL  A+eY+++L+
  Medtr8g098275.2 308 NHVLSERRRRAKLNERFLTLRSMVPSN-----SKDDKVSILDDAIEYLRKLE 354
                      78999*********************8.....7****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-192289IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.009304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.87E-14307358No hitNo description
SuperFamilySSF474594.06E-18307370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-12308354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-18308365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-15310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MISQILSGTI WFACPLYSTL AKGRALENGQ PIWLIDAYSV DCKEFSRALL AKSASIQTVV  60
CFPFMKGVIE LGTTDHVSED LSLIQQIKTS LLNSLSVDDP INARATLSSR NNEGVACVAF  120
DDNDYDVELI PEVGYDIINT TTSPNGSSNA LQANQLRNET FMVESWQVLD DDLSNCVHNS  180
VNSSDCISQN ISSAPKVGED CNNNQKMSLV DPLSEDWHYQ KILSELLKSN DQLTMGMHFQ  240
NFHQESSFCV WNKGVPVNFQ RPRQGTSQKL LKKILFEVPR MHTDGLLESQ EENDYREGTR  300
LEADEGMNHV LSERRRRAKL NERFLTLRSM VPSNSKDDKV SILDDAIEYL RKLEKKIREL  360
EAQREPTGIE SRSKKSHHDM VERTTDHYYN NKTNNGKKPM VKKRKICDIE ETRREICSDA  420
SKGSSNKNVT VSMSDNGVVI EMKCPSKAGR ILEIMEAVNN LNIDFNSVQS TEEADGSLHL  480
IIKSKFKGPA NATTKRIKQA LQKVASKF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.175471e-157pod| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g098275.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1995690.0KM199569.1 Trifolium repens isolate Tr_JAF13 bHLH protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447039.10.0transcription factor GLABRA 3 isoform X2
TrEMBLA0A072TV580.0A0A072TV58_MEDTR; BHLH transcription factor
STRINGXP_004503712.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-104bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]