PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g095390.1
Common NameMTR_8g095390
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 316aa    MW: 34259.6 Da    PI: 9.1402
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g095390.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEde+l++++kq G g+W++ ++  g+ R++k+c++rw +yl
  Medtr8g095390.1 14 KGAWSKEEDERLINYIKQQGEGCWRSLPKAAGLARCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding55.81.1e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T eEdel++ ++++ G++ W+ Ia++++ gRt++++k++w+++
  Medtr8g095390.1  67 RGNFTHEEDELIISLHAMVGNK-WSQIAQKLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.514961IPR017930Myb domain
SuperFamilySSF466894.93E-2912108IPR009057Homeodomain-like
SMARTSM007175.4E-121363IPR001005SANT/Myb domain
PfamPF002491.8E-141461IPR001005SANT/Myb domain
CDDcd001671.04E-101661No hitNo description
PROSITE profilePS5129428.50562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2865116IPR009057Homeodomain-like
SMARTSM007175.1E-1766114IPR001005SANT/Myb domain
PfamPF002493.4E-1667111IPR001005SANT/Myb domain
CDDcd001679.04E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGRSPCCEKQ HTNKGAWSKE EDERLINYIK QQGEGCWRSL PKAAGLARCG KSCRLRWINY  60
LRPDLKRGNF THEEDELIIS LHAMVGNKWS QIAQKLPGRT DNEIKNYWNT HIKRKLYSRG  120
IDPTTHQPLK TLSGTAAAST GTSSATTTSA EAASPTMVVN NNPPVFPVVA SNNESSTSSS  180
MSHHNKIKSE FQLFSNFSGS RLKKFVATDS GYGGVEESVS NSSSGVTVED IAYPRQINLE  240
LSLAIPSPSQ QQQPQALCLC RQISLGLYGS SHQPCCCNNT IPIVGVSTST APLPATTVAG  300
NGFFKFSGTG IVNKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29141167108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g095390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1487550.0AC148755.8 Medicago truncatula clone mth2-24n16, complete sequence.
GenBankAC1534590.0AC153459.9 Medicago truncatula clone mth2-47l12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630424.10.0myb-related protein 308
SwissprotP813935e-82MYB08_ANTMA; Myb-related protein 308
TrEMBLG7LGH20.0G7LGH2_MEDTR; Myb transcription factor
STRINGAET049000.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.19e-81myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]