PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g093070.1
Common NameMTR_8g093070
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 508aa    MW: 58326.5 Da    PI: 4.4877
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g093070.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS256.11.3e-781364951373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dp.mqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                      lv+lLl  Aea +s++++la+ ++++l++ +s  + d+ ++Rl  +ft++L  + ++       a +  +++ +++++++ ++++++e+sP++k
  Medtr8g093070.1 136 LVDLLLIGAEAAESQNMTLASDIIEKLNNASSVGKgDSlLNRLCLFFTQGLYYKTTN-------APKFHSEHVSTQTSTFCVFQILQELSPYVK 222
                      57899999**********************77654465279************9999.......33333333334556788999********** PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      f+h+taNqaI ea++g e vH+iDfdi++G+QWp+L+  +a R+ ++ slR+T++   + +s+ ++++tg+rL++fA++++ pf f+++++ + 
  Medtr8g093070.1 223 FAHFTANQAIFEATAGVEDVHVIDFDIMEGIQWPPLMVDFAMRK-KTTSLRVTAITV-DLQSEASVQQTGRRLKEFADSINFPFTFDTVMMVSE 314
                      *******************************************5.569********9.677***************************855544 PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleaklp 276
                      ed  ++e+  + gE+ +Vn+++  + ++++s sl +   ++L++v + sP++vv+ve+e    + + s sF+e f+eal++y a+ dsl ++l+
  Medtr8g093070.1 315 ED--FKEI--ELGETFIVNCMI-HQWMPNRSFSLVK---AFLDCVTKSSPRLVVLVEEElfnfSRLKSMSFVEFFCEALHHYIAVSDSLVSTLS 400
                      44..4555..339********9.5667888899988...********************8775556999********************99999 PP

             GRAS 277 res.eerikvErellgreivnvvacegaerrerhetlekWrerl..eeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                      r +  e + +E+e+lg++i + v +   e++er      W+ r+  +  G+k v +s+ + +qakll++ ++ +gy v+ e+  l l+Wk+rpL
  Medtr8g093070.1 401 RSHkMELALIEKEVLGNRILDSVRQFPCEKEERIL----WEGRFfySLKGYKRVGMSTCNISQAKLLVSLFG-KGYWVQFENCKLALCWKSRPL 489
                      9995666889******************9777766....9999844569***********************.9******************** PP

             GRAS 368 vsvSaW 373
                      +svS W
  Medtr8g093070.1 490 TSVSIW 495
                      ****** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.304110477IPR005202Transcription factor GRAS
PfamPF035144.4E-76136495IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MNVMDYEQFD YSFTPPYMNQ LHECSLENLS PLQAEDLLFP NTILDEILFD QDQSQYLSSP  60
NTILDEIFDQ EESMQGLLQQ HTNLDFNIIN HEQAMALEYE LCGGVTEKGR ENVFVSREKD  120
SYWKEVQEEL MEETSLVDLL LIGAEAAESQ NMTLASDIIE KLNNASSVGK GDSLLNRLCL  180
FFTQGLYYKT TNAPKFHSEH VSTQTSTFCV FQILQELSPY VKFAHFTANQ AIFEATAGVE  240
DVHVIDFDIM EGIQWPPLMV DFAMRKKTTS LRVTAITVDL QSEASVQQTG RRLKEFADSI  300
NFPFTFDTVM MVSEEDFKEI ELGETFIVNC MIHQWMPNRS FSLVKAFLDC VTKSSPRLVV  360
LVEEELFNFS RLKSMSFVEF FCEALHHYIA VSDSLVSTLS RSHKMELALI EKEVLGNRIL  420
DSVRQFPCEK EERILWEGRF FYSLKGYKRV GMSTCNISQA KLLVSLFGKG YWVQFENCKL  480
ALCWKSRPLT SVSIWVPTDY NMSDKVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3216449530374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g093070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630217.10.0nodulation-signaling pathway 2 protein-like
TrEMBLG7LD660.0G7LD66_MEDTR; GRAS family transcription factor
STRINGAET046930.0(Medicago truncatula)
STRINGAET047050.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131482130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-49GRAS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]