PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g090205.7
Common NameMTR_8g090205
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CAMTA
Protein Properties Length: 950aa    MW: 107664 Da    PI: 5.788
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g090205.7genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.76.1e-55181342118
             CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      l+ + rwl++ ei++iL+n++++++++++   p+sgsl+L++rk +ryfrkDG++w+kkkdgktvrE+he+LK g+vevl+cyYah+e+n +fq
  Medtr8g090205.7  18 LQAQYRWLRPAEICQILTNYNSFQISSQPSYMPPSGSLFLFDRKATRYFRKDGHNWRKKKDGKTVREAHERLKAGSVEVLHCYYAHGEQNDNFQ 111
                      67799***************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+yw+Leeel++ivlvhy+evk
  Medtr8g090205.7 112 RRTYWMLEEELSHIVLVHYREVK 134
                      ********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.21113139IPR005559CG-1 DNA-binding domain
SMARTSM010761.6E-7616134IPR005559CG-1 DNA-binding domain
PfamPF038592.4E-4920132IPR005559CG-1 DNA-binding domain
SuperFamilySSF812963.27E-15507592IPR014756Immunoglobulin E-set
PfamPF018334.5E-4507583IPR002909IPT domain
Gene3DG3DSA:1.25.40.203.7E-17690804IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.6693804IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.87E-17699804IPR020683Ankyrin repeat-containing domain
CDDcd002042.54E-13699802No hitNo description
PfamPF127961.1E-7715805IPR020683Ankyrin repeat-containing domain
SMARTSM002480.11743772IPR002110Ankyrin repeat
SMARTSM00248500782811IPR002110Ankyrin repeat
PROSITE profilePS500966.852911939IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 950 aa     Download sequence    Send to blast
MSNSYTMMAT TDIEEILLQA QYRWLRPAEI CQILTNYNSF QISSQPSYMP PSGSLFLFDR  60
KATRYFRKDG HNWRKKKDGK TVREAHERLK AGSVEVLHCY YAHGEQNDNF QRRTYWMLEE  120
ELSHIVLVHY REVKRTKATL IHAKENEESN PCDQQSYKVM PNTEAETSLP SSMNSGQASE  180
YEEAESAFNS HANSDFYSFL ELQQPAVQKI KAQLPYSNCP LPLKDDQERL PVIPQVDDIS  240
LSQTNETKYI NNVGLTCELS KVLGFSSWQD ILENKAGSHN VPFQSFPEKE PNNMEINSTS  300
QGYETMGQHL TISITKQHEN RSFIQAEAEG NWQASGFNSL SASTCPKDSA YSGSSCEVTY  360
SDNEQEVNEV DFQQSLEQFL LHAHQQHKVC MRNSSHEIPL KAEDRLKSDL GVDKSPDGIE  420
DTQFTSKKTI LSVSVAEDGL KKLDSFNQWM SKELCDVEES SKHSPSGAYW DTVESENGVD  480
STTIPSQVHL ENYVLDPSIC YDQLFSIIDY SPSWTFEDSE IEVLISGRFL KSQHEAEDCK  540
WSCMFGEIEV PAEITRNGVL CCHTPQHKAG RVPFYVTCSN RLACSEVREF DFRVNYTQED  600
NTAGETRSRN TYDTFNKRFG EFLSQEHDFP RVLDSISVNE KSQLRSKIGS LLGRKDDEWD  660
ELLKFTLDKD FSPELVHDQL LQNLLKDKLH AWLLQKTTED GKGPNVLDEG GQGVLHFAAF  720
FGYDWAFEPT IVAGVNVNFR DVNGWTALHW AAFCGRERTV ASLISLGGAP GALTDPCPQH  780
PSGRTPADLA SANGHKGIAG YLAESFLSSQ LKSLDLKRNM RETVGTKQRV QEQNNECFSH  840
EPSMKDSLAA VCNATQAAAR IHQVFRVQSF QRKQQKEYDG DKFGISDERA LSLITVNAKS  900
HKSGLRIEPV HVAATRIQNK FRSWKGRKDF LIIRQRIVKI QVHIVPTFA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.206342e-44root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g090205.7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446800.10.0calmodulin-binding transcription activator 1 isoform X1
TrEMBLA0A072TVD40.0A0A072TVD4_MEDTR; Calmodulin-binding transcription activator
STRINGXP_004504077.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]