PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g090205.3
Common NameMTR_8g090205
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CAMTA
Protein Properties Length: 1059aa    MW: 120519 Da    PI: 6.4666
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g090205.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.57.1e-55161322118
             CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      l+ + rwl++ ei++iL+n++++++++++   p+sgsl+L++rk +ryfrkDG++w+kkkdgktvrE+he+LK g+vevl+cyYah+e+n +fq
  Medtr8g090205.3  16 LQAQYRWLRPAEICQILTNYNSFQISSQPSYMPPSGSLFLFDRKATRYFRKDGHNWRKKKDGKTVREAHERLKAGSVEVLHCYYAHGEQNDNFQ 109
                      67799***************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+yw+Leeel++ivlvhy+evk
  Medtr8g090205.3 110 RRTYWMLEEELSHIVLVHYREVK 132
                      ********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.21111137IPR005559CG-1 DNA-binding domain
SMARTSM010761.6E-7614132IPR005559CG-1 DNA-binding domain
PfamPF038592.7E-4918130IPR005559CG-1 DNA-binding domain
SuperFamilySSF812963.2E-15505590IPR014756Immunoglobulin E-set
PfamPF018335.2E-4505581IPR002909IPT domain
Gene3DG3DSA:1.25.40.204.4E-17688802IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.6691802IPR020683Ankyrin repeat-containing domain
CDDcd002042.96E-13697800No hitNo description
SuperFamilySSF484032.02E-17697802IPR020683Ankyrin repeat-containing domain
PfamPF127961.3E-7713803IPR020683Ankyrin repeat-containing domain
SMARTSM002480.11741770IPR002110Ankyrin repeat
SMARTSM00248500780809IPR002110Ankyrin repeat
SuperFamilySSF525401.59E-7902958IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001522907929IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.852909937IPR000048IQ motif, EF-hand binding site
PfamPF006120.14910928IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0039930952IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.597931955IPR000048IQ motif, EF-hand binding site
PfamPF006122.2E-4933952IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1059 aa     Download sequence    Send to blast
MAHLHPNQFD IEEILLQAQY RWLRPAEICQ ILTNYNSFQI SSQPSYMPPS GSLFLFDRKA  60
TRYFRKDGHN WRKKKDGKTV REAHERLKAG SVEVLHCYYA HGEQNDNFQR RTYWMLEEEL  120
SHIVLVHYRE VKRTKATLIH AKENEESNPC DQQSYKVMPN TEAETSLPSS MNSGQASEYE  180
EAESAFNSHA NSDFYSFLEL QQPAVQKIKA QLPYSNCPLP LKDDQERLPV IPQVDDISLS  240
QTNETKYINN VGLTCELSKV LGFSSWQDIL ENKAGSHNVP FQSFPEKEPN NMEINSTSQG  300
YETMGQHLTI SITKQHENRS FIQAEAEGNW QASGFNSLSA STCPKDSAYS GSSCEVTYSD  360
NEQEVNEVDF QQSLEQFLLH AHQQHKVCMR NSSHEIPLKA EDRLKSDLGV DKSPDGIEDT  420
QFTSKKTILS VSVAEDGLKK LDSFNQWMSK ELCDVEESSK HSPSGAYWDT VESENGVDST  480
TIPSQVHLEN YVLDPSICYD QLFSIIDYSP SWTFEDSEIE VLISGRFLKS QHEAEDCKWS  540
CMFGEIEVPA EITRNGVLCC HTPQHKAGRV PFYVTCSNRL ACSEVREFDF RVNYTQEDNT  600
AGETRSRNTY DTFNKRFGEF LSQEHDFPRV LDSISVNEKS QLRSKIGSLL GRKDDEWDEL  660
LKFTLDKDFS PELVHDQLLQ NLLKDKLHAW LLQKTTEDGK GPNVLDEGGQ GVLHFAAFFG  720
YDWAFEPTIV AGVNVNFRDV NGWTALHWAA FCGRERTVAS LISLGGAPGA LTDPCPQHPS  780
GRTPADLASA NGHKGIAGYL AESFLSSQLK SLDLKRNMRE TVGTKQRVQE QNNECFSHEP  840
SMKDSLAAVC NATQAAARIH QVFRVQSFQR KQQKEYDGDK FGISDERALS LITVNAKSHK  900
SGLRIEPVHV AATRIQNKFR SWKGRKDFLI IRQRIVKIQA HVRGHQVRKN YRKIIWSVGI  960
VEKIILRWRR KGSGLRGFKS EAISEGTMVQ GVSSATEDDY DFLKEGRKQT EKRLEKALAR  1020
VKSMAQYPDA RDQYHRLLNV VTEIQENQVC VCLRKVFF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.206340.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g090205.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446801.10.0calmodulin-binding transcription activator 1 isoform X2
TrEMBLA0A072TTJ20.0A0A072TTJ2_MEDTR; Calmodulin-binding transcription activator
STRINGXP_004504077.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]