PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g089170.1
Common NameMTR_8g089170
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 157aa    MW: 17401.4 Da    PI: 4.4556
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g089170.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA36.38e-12730932
             GATA  9 TplWRrgpdgnktLCnaCGlyyrk 32
                     Tp WR+gp+ ++ LCnaCGl+y+ 
  Medtr8g089170.1  7 TPAWRQGPEEKPVLCNACGLRYQN 30
                     9*******99999*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0077244IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-7648No hitNo description
Gene3DG3DSA:3.30.50.103.9E-9630IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.19E-8728No hitNo description
PfamPF003201.0E-9730IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDSSPATPAW RQGPEEKPVL CNACGLRYQN WGDLADHSLK RCFPKELIAN SGNSSNNNLK  60
ESSSTIDVSD SDNDEKDSDS CKSAVSPKRR SLRIMNQKMT PIEKFQQELL DELKNHEIPD  120
ESSPEEVLLF ENMNNFIPSN EIGLGAVLLK PDGSFM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g089170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1618631e-138AC161863.21 Medicago truncatula clone mth2-175f4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027191885.15e-47GATA transcription factor 26-like
TrEMBLG7L9K01e-110G7L9K0_MEDTR; GATA zinc finger protein
STRINGAET044741e-111(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127471024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.16e-09GATA transcription factor 27
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]