PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g087000.3 | ||||||||
Common Name | MTR_8g087000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WRKY | ||||||||
Protein Properties | Length: 184aa MW: 20733.6 Da PI: 4.6303 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 49 | 1.2e-15 | 35 | 73 | 22 | 59 |
EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 r+YYrC+s gCp++k+vers+ dp++++itY+++Hnh Medtr8g087000.3 35 RAYYRCSSCkGCPARKQVERSRVDPTMLIITYSSDHNHA 73 9*****9988****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 5.3E-8 | 33 | 74 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.05E-12 | 33 | 75 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.0E-16 | 34 | 75 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-12 | 34 | 72 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.211 | 35 | 75 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MTSIFGNFKV CVKVEETESR FVLSVCELGH IYMYRAYYRC SSCKGCPARK QVERSRVDPT 60 MLIITYSSDH NHAWPVSKTT TRLSLKKTEP DPVEPDEKFA GHLVLDDELG WLGEIDTNSS 120 AILESPIMAE FDNDMASVFL PMEEEDELLF ADLGELPECS TVFRHGLLDA RRRLTAPWCG 180 TTT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.18475 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00167 | DAP | Transfer from AT1G29280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g087000.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC160628 | 0.0 | AC160628.37 Medicago truncatula clone mth2-187a11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003629812.2 | 1e-108 | probable WRKY transcription factor 65 isoform X1 | ||||
Swissprot | Q9LP56 | 4e-39 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | A0A072TTC3 | 1e-134 | A0A072TTC3_MEDTR; WRKY family transcription factor | ||||
STRING | AET04288 | 1e-107 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 6e-40 | WRKY DNA-binding protein 65 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g087000.3 |
Entrez Gene | 11411280 |
Publications ? help Back to Top | |||
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