PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g087000.1
Common NameMTR_8g087000
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 246aa    MW: 27563.9 Da    PI: 6.9428
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g087000.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.2e-3077135259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s  gCp++k+vers+ dp++++itY+++Hnh 
  Medtr8g087000.1  77 SDSWAWRKYGQKPIKGSPYPRAYYRCSSCkGCPARKQVERSRVDPTMLIITYSSDHNHA 135
                      69************************9988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-3171137IPR003657WRKY domain
SuperFamilySSF1182901.2E-2574137IPR003657WRKY domain
SMARTSM007741.6E-3476136IPR003657WRKY domain
PROSITE profilePS5081130.7977137IPR003657WRKY domain
PfamPF031065.0E-2578134IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MKRKFKNPHT HQEEDLTDIS QDSTPSSTSF NIDGSVTSHS SSSSKKSRRA IQKRVVQIPI  60
KEPHGSRLKG ESNTPPSDSW AWRKYGQKPI KGSPYPRAYY RCSSCKGCPA RKQVERSRVD  120
PTMLIITYSS DHNHAWPVSK TTTRLSLKKT EPDPVEPDEK FAGHLVLDDE LGWLGEIDTN  180
SSAILESPIM AEFDNDMASV FLPMEEEDEL LFADLGELPE CSTVFRHGLL DARRRLTAPW  240
CGTTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-19771371574WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.184750.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g087000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1606280.0AC160628.37 Medicago truncatula clone mth2-187a11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629812.20.0probable WRKY transcription factor 65 isoform X1
SwissprotQ9LP561e-74WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLG7LJI30.0G7LJI3_MEDTR; WRKY family transcription factor
STRINGAET042881e-173(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.14e-72WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]