PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g079660.1 | ||||||||
Common Name | MTR_8g079660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 265aa MW: 28266.8 Da PI: 5.3051 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.5 | 6.7e-36 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lr++C ++C lapyfp ++p++f vh +FG +nv+++lk+++ +++e+a++s vyeAear+rdPvyG++g ++lq++l++++ el Medtr8g079660.1 8 PCAACKHLRQECDSSCDLAPYFPPDNPERFIKVHSVFGKNNVSNMLKKVDASHHEQAIESFVYEAEARLRDPVYGCAGPAKDLQRRLNEVQMEL 101 7********************************************************************************************* PP DUF260 95 allkee 100 +++k+e Medtr8g079660.1 102 KSVKNE 107 **9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.395 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-35 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MAREIIRPCA ACKHLRQECD SSCDLAPYFP PDNPERFIKV HSVFGKNNVS NMLKKVDASH 60 HEQAIESFVY EAEARLRDPV YGCAGPAKDL QRRLNEVQME LKSVKNELAK YLNPQIVEFV 120 LGFPDCFGFK PNASAPTMTI GAGQLAFNQL PAAELTTQQI HNLEVLKQNL LSGPDGDDGL 180 AGFHMDVNVP VENGGINTSS HPVGGGSVNG SGGSTRFQMG ADILVRDSGL AGSHMLPDVP 240 PADAPSALPS SRADTIDNGG TSNQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-33 | 8 | 111 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-33 | 8 | 111 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g079660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC148525 | 0.0 | AC148525.14 Medicago truncatula chromosome 8 clone mth2-24i13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003629577.1 | 0.0 | LOB domain-containing protein 36 | ||||
TrEMBL | A0A396GM58 | 0.0 | A0A396GM58_MEDTR; Putative transcription factor AS2-LOB family | ||||
STRING | AET04053 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 4e-39 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g079660.1 |
Entrez Gene | 11411349 |
Publications ? help Back to Top | |||
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