PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g067635.1
Common NameMTR_8g067635
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 537aa    MW: 59816.1 Da    PI: 5.47
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g067635.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.78.8e-27349408260
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                      +D ++WrKYGqK++kgs++prsY++C+s  +C +kk ve+ ++ +++ e+tY geHnh+k
  Medtr8g067635.1 349 EDSWRWRKYGQKPIKGSPHPRSYFKCSSFnDCLAKKLVEKINTGEDTYEVTYIGEHNHKK 408
                      7*************************9877****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-27335409IPR003657WRKY domain
PROSITE profilePS5081126.532343409IPR003657WRKY domain
SuperFamilySSF1182906.41E-24344409IPR003657WRKY domain
SMARTSM007744.1E-32348408IPR003657WRKY domain
PfamPF031061.2E-22349407IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MENDDWDLFS IVRSCKAITY TAPATFCETA TPTLPITTNT ITNNTISPHN TTPNCFDDFT  60
LTLENSTIQI FPLKPNDFIE LDKLIICSNP TKIIPISTTS DIPTPSVTTT TIPTSSSTTT  120
IITTPSTTTI PNRITTDTIT NTSSQGISYQ NSMFFNFPTL VEQQQMQPSE FTELEKWILQ  180
FNPTTTIPIS AITTPNPTTS ITSTPISFTA PIATINTTTT TTPIIPTTTT TTTMNNSETN  240
GINQYSTVSN FPMVVEQQQV QANQNRVSVF NSISCIKTTT TNFHNELNHP LVPQEPHRNH  300
NQLPILLPQT SSTTLLNTNP KQQKIKSGKR KNNNQMTVVN YVKANKISED SWRWRKYGQK  360
PIKGSPHPRS YFKCSSFNDC LAKKLVEKIN TGEDTYEVTY IGEHNHKKPA NNRNSIVGTS  420
CWNMSSNSGL DVVREVGCCS NVRNLGFPGE SNMPYLKNEV IKNAGKLDSS DMIMVPFDEL  480
ERENSNIFSD ESKIPDREAK LIESSNEDDI LIPNMTNMLD DFFLNFNNIN NGSPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-143494101878Probable WRKY transcription factor 4
2lex_A7e-143494101878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g067635.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072TSA80.0A0A072TSA8_MEDTR; WRKY DNA-binding domain protein
STRINGAET033310.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2058325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.19e-26WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]