PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g041420.1
Common NameMTR_8g041420
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YC
Protein Properties Length: 306aa    MW: 33306.8 Da    PI: 4.8747
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g041420.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC61.22.2e-196861898
            NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                     ++++P arikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t++   ++ +v++ ++fdfl d+v +
  Medtr8g041420.1  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLKDVVSK 86
                     5789**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-26272IPR009072Histone-fold
SuperFamilySSF471133.28E-20390IPR009072Histone-fold
PfamPF008082.5E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MKKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK  60
TMNSLHLKHC VQSYNVFDFL KDVVSKVPDY GHGHGHTDAG GADDQTIPKR RKAAGDDGND  120
SDEEAKRGKM LELGHTSPTG RGRGRGRGRG RGRGRGRAIQ REGHHQETES EPCPSVQQVS  180
QNTTDTNVAI LDGTESNELP KNNVVVLPAD NSDSLLNIDL NANMNENDDK KASTVANLTV  240
TIPEAANPEA ANPPVSEPPP PDSSHHEEIP GWSLSEVDKM AIDSMQLAQL GTRMDEDDED  300
YDEEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A3e-21272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146156RGRGRGRGRGR
2148157RGRGRGRGRA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.114360.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g041420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1384520.0AC138452.10 Medicago truncatula chromosome 8 clone mth2-17p11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628014.10.0dr1-associated corepressor homolog
TrEMBLG7LID30.0G7LID3_MEDTR; Negative cofactor 2 transcriptional co-repressor, putative
STRINGAET024900.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-63nuclear factor Y, subunit C11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]