PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g036130.1
Common NameMTR_8g036130
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 248aa    MW: 28463.2 Da    PI: 9.1466
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g036130.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.62.4e-161050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     +i n+  r+vt+ kR +g+lKK  ELS+LC++e++ i++++
  Medtr8g036130.1 10 FIVNDAARKVTYKKRMKGLLKKIDELSTLCGIEACAIVYGP 50
                     799************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.937149IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-21176IPR002100Transcription factor, MADS-box
SMARTSM004328.7E-21160IPR002100Transcription factor, MADS-box
CDDcd002666.65E-30287No hitNo description
PRINTSPR004043.7E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-151050IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MTRRKVKLAF IVNDAARKVT YKKRMKGLLK KIDELSTLCG IEACAIVYGP YEPQPEIWPS  60
PWGVQNVLSK FSMMPEILME QSKKMMNQET FMNQRVMKAK EQVKKQQKDN KQKEIALLMF  120
QCLNAGKIVD NNMSMVDVNN LAWLIDQNLK DIGRRLEAVD NNGQNQIMTT PTQSEVQFQM  180
APPPLVKKEE MAMMGHDHFG ITMSNGDIMQ RQLFMNLMMN DNRDENVPFG HPHDASLQNG  240
FWPNLLP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225RRKVKLAFIVNDAARKVTYKKRMK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g036130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445020.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-51AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A072TZT10.0A0A072TZT1_MEDTR; MADS-box transcription factor family protein
STRINGXP_004500461.11e-105(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-43AGAMOUS-like 80
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]