PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g031360.1
Common NameMTR_8g031360
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 298aa    MW: 33422.2 Da    PI: 6.2555
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g031360.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41e-151563148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEde lv+ +k+ Gg+ +W++ ++  g+ R++k+c++rw +yl
  Medtr8g031360.1 15 KGPWTSEEDEVLVNFIKKNGGHgSWRSLPKLAGLLRCGKSCRLRWTNYL 63
                     79*******************9***********99************97 PP
2Myb_DNA-binding53.65.3e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++l +++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
  Medtr8g031360.1  69 RGPFTPEEEKLVIQLHAILGNR-WASIASQLP-GRTDNEIKNLWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5211063IPR017930Myb domain
SuperFamilySSF466891.15E-2811110IPR009057Homeodomain-like
SMARTSM007177.4E-111465IPR001005SANT/Myb domain
PfamPF002492.9E-131563IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-211670IPR009057Homeodomain-like
CDDcd001676.31E-81763No hitNo description
PROSITE profilePS5129426.58964118IPR017930Myb domain
SMARTSM007178.8E-1668116IPR001005SANT/Myb domain
PfamPF002495.5E-1669114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-2771119IPR009057Homeodomain-like
CDDcd001678.21E-1271114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGRTPCCDNK MGLKKGPWTS EEDEVLVNFI KKNGGHGSWR SLPKLAGLLR CGKSCRLRWT  60
NYLRPDIKRG PFTPEEEKLV IQLHAILGNR WASIASQLPG RTDNEIKNLW NTHLKKRLIC  120
MGIDPQTHEP IASSHYFPIS KSNSSIATRH MAQWESARLE AEARLSKDTS LFNNGNIPSL  180
ASNKADSDYF LKIWNSEVGQ SFRTGRKSDD EDDDDKTKCQ SSMSQEGSSC NNNNKCGSVS  240
VTTTTSNVME DFEWRNYKSF DVGYDDSSSS NDLEDSSDTA LQLLLDFPSN NDMSFLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28131185108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g031360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444869.10.0transcription factor MYB41
SwissprotQ9M2D91e-120MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A072TN470.0A0A072TN47_MEDTR; Myb transcription factor MIXTA-like protein
STRINGAES752060.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-111myb domain protein 17
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]