PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g028565.1
Common NameMTR_8g028565
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 339aa    MW: 37274 Da    PI: 6.1319
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g028565.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.3e-31155213259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp+++++tY+geH h+
  Medtr8g028565.1 155 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNKSDPSMFIVTYTGEHSHP 213
                      79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-31143215IPR003657WRKY domain
PROSITE profilePS5081134.429149215IPR003657WRKY domain
SuperFamilySSF1182901.7E-26151215IPR003657WRKY domain
SMARTSM007741.6E-37154214IPR003657WRKY domain
PfamPF031062.3E-26156213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEVDWDLHAV VRGYTNLTSS SSSSTTTSTT TLATSSTHSY NNNNNNNNFF SIYPTEQTSQ  60
VFSLSNPFET KSSIEELHEL CKPFFFKSSS SSQPLSSGSF SYSSPSPKSP HIQPKQLLVN  120
NKLHHHAASA ITPRSKRRKI QHKKVCEVQA EKLSSDIWAW RKYGQKPIKG SPYPRGYYRC  180
SSSKGCLARK QVERNKSDPS MFIVTYTGEH SHPAPTHRNS LAGSTRQKPL SPQTVTAEDS  240
SQQPFTKQVS SSTSEAEEED VTTLLSVKSE SKEDLEEMMN DDEEENEFEL SDMVVTDDFF  300
EGLDELTGFA GKTVASSGGD CFGDPFAASI ALPACGGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-20143216680Disease resistance protein RRS1
5w3x_D4e-20143216680Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g028565.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444773.10.0WRKY transcription factor 22
TrEMBLA0A072TPN30.0A0A072TPN3_MEDTR; Putative transcription factor WRKY family
STRINGAES787120.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-67WRKY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]