PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g024790.1 | ||||||||
Common Name | MTR_8g024790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 465aa MW: 52211.6 Da PI: 5.512 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.3 | 6.7e-14 | 290 | 336 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RR+++N++f Lr+++P+ K++Ka+ L Av+YI++L Medtr8g024790.1 290 MNHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLSDAVDYINEL 336 5899***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.7E-41 | 26 | 181 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 2.75E-18 | 287 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.012 | 287 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.18E-14 | 290 | 341 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.4E-17 | 291 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-11 | 291 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.0E-17 | 293 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00993 | 406 | 462 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MSPSSSSSII SLPHENENPS PQTLTLQQKL QFLVQTQSEN WVYAILWQTT KDEKGKPLLS 60 WGEGYFQGTK ETTNSNKQND SNTCANKDAE WFYVMSLTRI FSIGNASSIS LPGKSFALDS 120 VLWLNSKHEL QIYNCERSNE AHVHGIETLI CIPTTNGVIE MGSYDNIQQN WNLVHQAKSM 180 FQTSSSESNS EIDLISTNPL DKSMFQTFAD IGIVSGSGED TDETQKTMNQ KLQQMNNIVS 240 SCSIDSENSD SEYCPPLATP TKTRTEKDSF EKREPKKRGR KPLSGTQTPM NHVEAERQRR 300 EKLNHRFYAL RSVVPNVSKM DKASLLSDAV DYINELKSKI EDLESVQQKE SKKVKMETME 360 IVDNNSATTT STVVDQKRPC NVNAFEIDVK IIGNDAMVRV QSENVNHPGA RLMSVLKDLE 420 FQVHHASIST VNEVMVQDVV VRIPNEMNKE ESLIRSAILM KLGQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 7e-29 | 25 | 181 | 8 | 192 | Transcription factor MYC3 |
4rqw_B | 7e-29 | 25 | 181 | 8 | 192 | Transcription factor MYC3 |
4rs9_A | 7e-29 | 25 | 181 | 8 | 192 | Transcription factor MYC3 |
4yz6_A | 7e-29 | 25 | 181 | 8 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g024790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013444575.1 | 0.0 | transcription factor MYC2 | ||||
TrEMBL | A0A072TYH1 | 0.0 | A0A072TYH1_MEDTR; Basic helix loop helix (BHLH) family transcription factor | ||||
STRING | XP_004510627.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 3e-50 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g024790.1 |
Entrez Gene | 25500640 |
Publications ? help Back to Top | |||
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