PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g022290.1
Common NameMTR_8g022290
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 372aa    MW: 40319.8 Da    PI: 10.1127
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g022290.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix461.4e-1467159186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr..t.sessstcpyfdqle 86 
                      +W++  + +Liea  e+  +l+rg+lk+++W+ev++ +       +  ++ +qCk++++ ++k+yk +k+  + +  +   ++st++++d+l+
  Medtr8g022290.1  67 CWSEAATAVLIEAWGERYLELSRGNLKQKHWKEVAEIVngrgDYLKAPKTDVQCKNRIDTVKKKYKSEKAKIGAGggSgGVTTSTWRFYDRLD 159
                      7*************************************75555555678899****************99877764232446789*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-2565161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0048831Biological Processregulation of shoot system development
GO:0005730Cellular Componentnucleolus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDDDDEIHSI HSNPSPASGS PSPVSSSGAI GSISVTVAAP AANSYALALP IQNTTTRGSN  60
GGGREDCWSE AATAVLIEAW GERYLELSRG NLKQKHWKEV AEIVNGRGDY LKAPKTDVQC  120
KNRIDTVKKK YKSEKAKIGA GGGSGGVTTS TWRFYDRLDQ LIGPTAKISG VSGTSHTGNS  180
NLPQHKVPLG IPVGIRAYGA RGANQVNSQK KNIQQAQLNY QKIQLRPRVS ELNSSDNSSE  240
KEALSPVSSD SLPPPERKRA KVMNSNSKGR GWGSAVRELT QAIVKFGEAY EQAETSKLQQ  300
VVEMEKQRMK FAKDLELQRM QFFMKTQVEI SQLKLGRKSV NVNGNTSNHQ NNNNVSSNNN  360
NSNHNNNSDS E*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g022290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1520571e-135AC152057.11 Medicago truncatula chromosome 8 clone mth2-25a12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627372.10.0trihelix transcription factor ASIL1
SwissprotQ9LJG81e-97ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLG7L8C70.0G7L8C7_MEDTR; Putative transcription factor Trihelix family
STRINGAET018480.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-79sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]