PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g020490.1 | ||||||||
Common Name | MTR_8g020490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 28853.4 Da PI: 8.6161 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.7e-17 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd++l ++v +G g W ++a+ g++R++k+c+ rw++yl Medtr8g020490.1 10 KGAWSREEDDILSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.4e-16 | 63 | 107 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +t+E++ +++++++lG++ W++Ia++++ gRt++++k++w++ Medtr8g020490.1 63 RGHISTDEEDMIIRLHRLLGNR-WSLIAKRLP-GRTDNEIKNYWNTN 107 67779*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.882 | 5 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.77E-29 | 8 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-15 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-16 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-22 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.62E-10 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 20.288 | 62 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-15 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 63 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 65 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.08E-11 | 67 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MVRSPKEVNK GAWSREEDDI LSKYVVIHGE GKWQKVAQNA GLKRCGKSCR QRWLNYLKPG 60 IKRGHISTDE EDMIIRLHRL LGNRWSLIAK RLPGRTDNEI KNYWNTNLSK KLQKQPTSSS 120 SLPSPSSVSL RHNHGKCGHV APEAPKPRRL KAVHQYKILE KNSGSEYDQG SDETSIADFF 180 IDFDHQDQLM VGDDESNSKI PQMEDHKVSS TNSTHSSSSP SDHCHLLAEK FDPQEILLDV 240 ELKKMASFLG LEND* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-26 | 7 | 112 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.24763 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Highly expressed from the very early stages of embryogenesis to the globular stage, decreases rapidly from the late heart-torpedo stage and did not persist after the completion of embryogenesis. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at a high level in immature siliques and at a lower level in flowers. Undetected in young seedlings, roots, leaves and inflorescence stems. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g020490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ337434 | 0.0 | HQ337434.1 Medicago truncatula Myb transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003627264.1 | 0.0 | myb-related protein 305 | ||||
Swissprot | Q9FJA2 | 2e-52 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | G7L6T6 | 0.0 | G7L6T6_MEDTR; Myb transcription factor | ||||
STRING | AET01740 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15355 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 5e-51 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g020490.1 |
Entrez Gene | 11423980 |