PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g012655.1
Common NameMTR_8g012655
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 244aa    MW: 27385.8 Da    PI: 8.8072
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g012655.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.16.8e-11114157151
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                      +  +GV++  k+ +W A I++      +k+++lg+  + eeAa+++++a+ 
  Medtr8g012655.1 114 CVMRGVYF--KNMKWQAAIKVD-----KKQIHLGTVASQEEAARLYDRAAF 157
                      568***99..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-5114158IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-8115160IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-6117162IPR001471AP2/ERF domain
SMARTSM003801.6E-4117172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSGNNSFV TPLPLYCENL ARYEISSQNA NPKSEQSMVL DITSVRDSVG  60
TQDSQNTAVK DESGSSDVSG SNLSKEQPSQ QSIGPPVKRR KRHSRKPREN QEPCVMRGVY  120
FKNMKWQAAI KVDKKQIHLG TVASQEEAAR LYDRAAFMCG REPNFELSEE EKLELSKFKW  180
EEFLAVTRQS ITCKKHKKSH SPGPVNMVDE PSIHRGDCDS KQGVTDFPVN GEPEQETTVS  240
RNI*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g012655.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444108.10.0ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024627868.10.0ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024627869.10.0ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024627870.10.0ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP92e-45ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A072TX660.0A0A072TX66_MEDTR; Ethylene response factor
STRINGXP_004510251.11e-117(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.26e-35ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]