PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g006815.1
Common NameMTR_8g006815
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 200aa    MW: 22006.8 Da    PI: 9.6841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g006815.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97.1e-2095145255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +ykGVr+++ +g+++AeIrdp++ng  +r++lg++ +ae+Aa a+++a+ k++g
  Medtr8g006815.1  95 RYKGVRRRP-WGKFAAEIRDPNKNG--ARVWLGTYESAEDAALAYDRAAFKMRG 145
                      69*******.***********8887..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.78E-3194155No hitNo description
SMARTSM003801.8E-3895159IPR001471AP2/ERF domain
PfamPF008471.3E-1495145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-3295154IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2395154IPR016177DNA-binding domain
PROSITE profilePS5103224.15795153IPR001471AP2/ERF domain
PRINTSPR003673.7E-1396107IPR001471AP2/ERF domain
PRINTSPR003673.7E-13135155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MVKLESTTLE SSDLAFLESI QRYLLEDHHD FNPLTAITTA SHGIAPVINR TSPSSPTSSL  60
SSDSNSTSKS KTLHCDASHS LPASREAHAP PCWQRYKGVR RRPWGKFAAE IRDPNKNGAR  120
VWLGTYESAE DAALAYDRAA FKMRGSKAKL NFPHLIDSDV SESMVVTAKR RAVELCSSSR  180
VVLEPKRKMS RVSGYDSLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-3296158668ATERF1
3gcc_A2e-3296158668ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g006815.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013443813.11e-146ethylene-responsive transcription factor 13
SwissprotQ8L9K17e-39ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A072TLW71e-144A0A072TLW7_MEDTR; AP2 domain class transcription factor
STRINGXP_004515359.11e-74(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-31ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]