PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g005750.1
Common NameMTR_8g005750
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 280aa    MW: 32246.7 Da    PI: 6.5539
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g005750.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.69.3e-22103163259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dDg++WrKYGqK++ +s+++r YYrCt++   +C+++k+v+r +e p + ++tY ++H+++
  Medtr8g005750.1 103 DDGHEWRKYGQKTILNSKYSRDYYRCTHKidqRCKATKQVQRIQEKPPLYKTTYYDHHTCN 163
                      8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-2389164IPR003657WRKY domain
PROSITE profilePS5081117.41997165IPR003657WRKY domain
SuperFamilySSF1182901.7E-2299164IPR003657WRKY domain
SMARTSM007744.2E-30102164IPR003657WRKY domain
PfamPF031063.9E-22103162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDDEAMKELV RGHELAKQLG QHLSNDELFA QHLVNNVINS FTNTLFLLNN KHHQREQNFS  60
LTIKSEEDSQ DSCKTNSTPG ARGSHKRRKT RETCEEVSER PTDDGHEWRK YGQKTILNSK  120
YSRDYYRCTH KIDQRCKATK QVQRIQEKPP LYKTTYYDHH TCNKDNIIIF EPTSPHDHIL  180
LSFNNTFPTP TQQDCPFLSS STSSSSFNSS HSVSVDEYLL SPQPILDNSI STRHVLSTIS  240
SSTTLESDDH KDMMIMYGLL YDSVELDTDF LHPFHGFQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-18103162968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g005750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1514810.0AC151481.4 Medicago truncatula chromosome 8 clone mth2-3m11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626678.10.0probable WRKY transcription factor 70
TrEMBLG7LAR20.0G7LAR2_MEDTR; Putative transcription factor WRKY family
STRINGAET011540.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-31WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]