PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g117730.1
Common NameMTR_7g117730
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 257aa    MW: 29915.2 Da    PI: 9.5747
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g117730.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.2e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT  Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl
  Medtr7g117730.1 14 RGPWTSREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding51.62.2e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+eEd+l+++ + + G++ W++Ia +++ gRt++++k++w+++l
  Medtr7g117730.1  67 RGNITPEEDDLIIRMHSLIGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                      7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.941961IPR017930Myb domain
SuperFamilySSF466898.39E-3011108IPR009057Homeodomain-like
SMARTSM007174.1E-121363IPR001005SANT/Myb domain
PfamPF002496.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-241568IPR009057Homeodomain-like
CDDcd001671.87E-81661No hitNo description
PROSITE profilePS5129426.40262116IPR017930Myb domain
SMARTSM007175.8E-1666114IPR001005SANT/Myb domain
PfamPF002497.2E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2769117IPR009057Homeodomain-like
CDDcd001679.30E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRTPCCSKV GLHRGPWTSR EDALLTKYIQ AHGEGQWRSL PKRAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPEEDDLIIR MHSLIGNRWS LIAGRLPGRT DNEIKNYWNT HLSKKLKNQE  120
QIEKKKKKQK KNDKNKVITK VPEDSEKKTL VYLPKPIRVK KTLSSIIPRT DITLNLEYKS  180
VTTSQEEEQR TETKERDSDG FGLLFEEQYH ADLVNNDDIE CQSGFLEKMY EEYLQLLKNE  240
ENHEKILDSF AQSLLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g117730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450665.10.0transcription repressor MYB6
SwissprotQ388506e-63MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A072U6A50.0A0A072U6A5_MEDTR; Myb transcription factor
STRINGGLYMA19G44660.11e-110(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.14e-63myb domain protein 111
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]