PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g109580.1
Common NameMTR_7g109580
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 557aa    MW: 64507.6 Da    PI: 5.7406
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g109580.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS265.91.4e-811875542374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkf 93 
                       + L+ +Ae vs ++ e+a++lL   + ++s +g+ +qR++++f++AL++r+++++ +++k    +e+s  + +e++ + k+   ++  P+ ++
  Medtr7g109580.1 187 AQFLYVAAERVSLQQYERAKKLLLYCQWNSSITGNCVQRIVFHFAQALQERIVKETGRVVKGSDKNEES--ELIEKMGSKKAlmCHQKLPFNQV 278
                      578999************************************************777777655444444..48888888888556899****** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg.ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                       ++t  qaI+e v+ e+++H iDfdi+ G+Q +aL+qaL++R++     +++ ++g ++   k+++eetg++La+fAe+l++pf +++++++++
  Medtr7g109580.1 279 MQFTGIQAIVEHVKFETKIHLIDFDIKSGVQCIALMQALSERQDCiVEIFKLSAIGLNT--CKNKIEETGKNLASFAESLNLPFLYKPVLVEDM 370
                      *******************************************651569********55..********************************* PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                       +++ ++++++++Ea+aV + + l +l +++ ++e+    +++++++++P +++v e ea++ns+sF++rf+eal +ysa+fd+ e+ +++e+e
  Medtr7g109580.1 371 LEIKEDDFEIEKDEAVAVYSPYFLRTLISKQDCMEN----LMRVLRDIKPCIMIVLETEASLNSQSFVNRFVEALFFYSAFFDMAETCMSEEDE 460
                      ****************************99988888....*************************************************99999 PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                       r+  E   l+  ++n+va eg+er+ r+ +   Wr+ + +  + + ++se  + qa+l+ ++++ ++   ve++ ++l+lgWk+ p++s+SaW
  Medtr7g109580.1 461 CRMITEGI-LSVGLRNIVASEGRERTVRNVKIDVWRRFFARYRMVETRFSEACVYQAELVSKEFDdGKFCDVEKNGKCLILGWKGTPMYSISAW 553
                      99999988.********************************************************666689*********************** PP

             GRAS 374 r 374
                      r
  Medtr7g109580.1 554 R 554
                      8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.616160533IPR005202Transcription factor GRAS
PfamPF035144.7E-79187554IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MEIDHFSSTH DFVEEVVFQD KQHSFSGIIS NPLPKENDQL PNMFNNNQNH HHHQQQQEFE  60
VCNFMSLLED ININLETDQQ KNLHHKVPIP KPLENNIQKM PQYLSSLEIL RNHGSRFNRN  120
NTINTKASSN LEQHQKMSTE GIIRVAGARY TQYSSSHWSD NFCIQTHPYG FDLNGLSEEE  180
NRDIELAQFL YVAAERVSLQ QYERAKKLLL YCQWNSSITG NCVQRIVFHF AQALQERIVK  240
ETGRVVKGSD KNEESELIEK MGSKKALMCH QKLPFNQVMQ FTGIQAIVEH VKFETKIHLI  300
DFDIKSGVQC IALMQALSER QDCIVEIFKL SAIGLNTCKN KIEETGKNLA SFAESLNLPF  360
LYKPVLVEDM LEIKEDDFEI EKDEAVAVYS PYFLRTLISK QDCMENLMRV LRDIKPCIMI  420
VLETEASLNS QSFVNRFVEA LFFYSAFFDM AETCMSEEDE CRMITEGILS VGLRNIVASE  480
GRERTVRNVK IDVWRRFFAR YRMVETRFSE ACVYQAELVS KEFDDGKFCD VEKNGKCLIL  540
GWKGTPMYSI SAWRFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-3719455327378Protein SCARECROW
5b3h_A4e-3719455326377Protein SCARECROW
5b3h_D4e-3719455326377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g109580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1715330.0AC171533.3 Medicago truncatula chromosome 7 BAC clone mth2-82b20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625975.20.0DELLA protein RGL1
TrEMBLG7KSU20.0G7KSU2_MEDTR; GRAS family transcription factor
STRINGAES821930.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.16e-42GRAS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]