PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g104980.1 | ||||||||
Common Name | MTR_7g104980, MtrDRAFT_AC150442g29v2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WRKY | ||||||||
Protein Properties | Length: 216aa MW: 23805.1 Da PI: 5.9405 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 42.4 | 1.4e-13 | 18 | 56 | 23 | 60 |
EEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 23 sYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 sYY+C+++ +C +kk+ve+s+ + +++++ Y g Hnh+k Medtr7g104980.1 18 SYYKCSTSgDCLAKKQVEKSKAEDNTFVVRYIGMHNHKK 56 9*****999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 1.5E-6 | 12 | 56 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.5E-9 | 16 | 55 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-10 | 17 | 57 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-10 | 17 | 57 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.722 | 18 | 57 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MYEIKKIAAH CLMDTYMSYY KCSTSGDCLA KKQVEKSKAE DNTFVVRYIG MHNHKKPVVN 60 RNFVNETTQN KSSKTKLLVI RDTGSPSNVR NLGSPNVAML QFDHSENSNA QVLAGKSKVP 120 CLETKVTESH LPVVGEFKSS ANVGNLGLPS GMMLQFDEMD NDNDHVLAGE SRISYSKSEL 180 IGSFDDDDIM IPNMVAMSED LLLDFNLLNG GILFP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g104980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC150442 | 0.0 | AC150442.2 Medicago truncatula chromosome 7 clone mth2-2o12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024632663.1 | 1e-64 | probable WRKY transcription factor 29 | ||||
TrEMBL | Q2HTE9 | 1e-158 | Q2HTE9_MEDTR; DNA-binding WRKY | ||||
STRING | AES82069 | 1e-159 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17879 | 2 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 3e-12 | WRKY DNA-binding protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g104980.1 |
Entrez Gene | 11427189 |
Publications ? help Back to Top | |||
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